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Geology topics

J.H. Petersen

Publications and source records attributed to J.H. Petersen.

At least 19 recordsLinked to original sources
USGS2011

Development of a bioenergetics model for humpback chub and evaluation of water temperature changes in the Grand Canyon, Colorado River

The construction of Glen Canyon Dam above the Grand Canyon (Arizona) has reduced the water temperature in the Colorado River and altered the growth rate and feeding patterns of the federally endangered humpback chub Gila cypha. A bioenergetics model for humpback chub was developed and used to examine how warmer water temperatures in the lower Colorado River (achieved through a temperature control device [TCD] at Glen Canyon Dam) might influence their growth rate and food requirements. Parameter values for humpback chub were developed by Monte Carlo filtering and fitting to laboratory growth. Parameter bounds were established from the literature for Gila species, random parameter sets were selected within these bounds, and the growth of modeled humpback chub was compared with criteria from a laboratory growth experiment at 24??C. This method of parameter estimation could be applied to other imperiled fishes where physiological studies are impractical. Final parameter values were corroborated by comparison with the growth rates of humpback chub from independent field and laboratory studies. Simulations indicated that increasing water temperatures from approximately 9??C to 16??C during summer and fall, the change expected from the TCD, may have a minimal effect on humpback chub growth rate unless food availability also increases with temperature. To evaluate the effects of increased temperatures on humpback chub in the lower Colorado River, it will be essential to monitor their growth rate, the invertebrate community, and the predators of humpback chub, which are also influenced by temperature changes. Bioenergetics models for humpback chub and their predators should be helpful tools for identifying potential scenarios and evaluating the complex interactions resulting from a TCD. ?? Copyright by the American Fisheries Society 2005.

Transactions of the American Fisheries Society↗
USGS2011

An overview of methods for developing bioenergetic and life history models for rare and endangered species

Many fish species are at risk to some degree, and conservation efforts are planned or underway to preserve sensitive populations. For many imperiled species, models could serve as useful tools for researchers and managers as they seek to understand individual growth, quantify predator-prey dynamics, and identify critical sources of mortality. Development and application of models for rare species however, has been constrained by small population sizes, difficulty in obtaining sampling permits, limited opportunities for funding, and regulations on how endangered species can be used in laboratory studies. Bioenergetic and life history models should help with endangered species-recovery planning since these types of models have been used successfully in the last 25 years to address management problems for many commercially and recreationally important fish species. In this paper we discuss five approaches to developing models and parameters for rare species. Borrowing model functions and parameters from related species is simple, but uncorroborated results can be misleading. Directly estimating parameters with laboratory studies may be possible for rare species that have locally abundant populations. Monte Carlo filtering can be used to estimate several parameters by means of performing simple laboratory growth experiments to first determine test criteria. Pattern-oriented modeling (POM) is a new and developing field of research that uses field-observed patterns to build, test, and parameterize models. Models developed using the POM approach are closely linked to field data, produce testable hypotheses, and require a close working relationship between modelers and empiricists. Artificial evolution in individual-based models can be used to gain insight into adaptive behaviors for poorly understood species and thus can fill in knowledge gaps. ?? Copyright by the American Fisheries Society 2008.

Transactions of the American Fisheries Society↗
USGS2009

Research in thermal biology: Burning questions for coldwater stream fishes

With the increasing appreciation of global warming impacts on ecological systems, in addition to the myriad of land management effects on water quality, the number of literature citations dealing with the effects of water temperature on freshwater fish has escalated in the past decade. Given the many biological scales at which water temperature effects have been studied, and the growing need to integrate knowledge from multiple disciplines of thermal biology to fully protect beneficial uses, we held that a survey of the most promising recent developments and an expression of some of the remaining unanswered questions with significant management implications would best be approached collectively by a diverse research community. We have identified five specific topic areas of renewed research where new techniques and critical thought could benefit coldwater stream fishes (particularly salmonids): molecular, organism, population/species, community and ecosystem, and policy issues in water quality. Our hope is that information gained through examination of recent research fronts linking knowledge at various scales will prove useful in managing water quality at a basin level to protect fish populations and whole ecosystems. Standards of the past were based largely on incipient lethal and optimum growth rate temperatures for fish species, while future standards should consider all integrated thermal impacts to the organism and ecosystem. ?? Taylor and Francis Group, LLC.

Reviews in Fisheries Science↗
USGS2007

Comparative growth and consumption potential of rainbow trout and humpback chub in the Colorado River, Grand Canyon, Arizona, under different temperature scenarios

We used bioenergetics models for humpback chub, Gila cypha, and rainbow trout, Oncorhynchus mykiss, to examine how warmer water temperatures in the Colorado River, Grand Canyon, Arizona, through a proposed selective withdrawal system (SWS) at Glen Canyon Dam, would affect growth, consumption, and predation rates. Consumption by the rainbow trout population was at least 10 times higher than by the smaller humpback chub population. Water temperature increases of 6??C during autumn increased growth of humpback chub and likely increased their survival by reducing the time vulnerable to predation. Water temperature increases caused by drought in 2005 did not alter humpback chub growth as much as the SWS. Increased temperatures might cause changes to the invertebrate community and the distribution and abundance of other warmwater nonnative fishes. The implications on the entire aquatic community need to be considered before any management action that includes increasing water temperatures is implemented.

Southwestern Naturalist↗
USGS2003

Evacuation of Passive Integrated Transponder (PIT) Tags from Northern Pikeminnow Consuming Tagged Juvenile Chinook Salmon

Prey fish implanted with passive integrated transponder (PIT) tags can be used in predation studies if the timing of tag evacuation from the predators is understood. Laboratory experiments were conducted to determine how PIT tags in juvenile Chinook salmon Oncorhynchus tshawytscha that were consumed by northern pikeminnow Ptychocheilus oregonensis were evacuated in relation to various parameters. The rate of evacuation was directly related to temperature, while predator size and the number of prey consumed had less effect on the timing of tag evacuation. A power model was fitted to predict the proportion of tags expected to be evacuated at different intervals after ingestion. These results could be used in planning field or laboratory predation experiments with PIT-tagged prey fish.

North American Journal of Fisheries Management↗
USGS2003

Bigger is not always better for overwintering young-of-year steelhead

Many fishes occur across broad ranges of latitude and elevation, where winter temperatures can vary from mild to harsh. We conducted a laboratory experiment with three sizes of age-0 steelhead Oncorhynchus mykiss to examine growth, condition, and energy reserves under low rations at three levels of water temperature typical of this species' distribution during winter. At the end of the 111-d experiment, all three starting sizes of age-0 steelhead (small, 2-3 g; medium, 3-4 g; large, 4-5 g) held in 3??C water had lower total lipid weight than those held in 6??C and 9??C water. Large fish had higher total lipid weight than small fish at the onset of the experiment and retained higher amounts at the end. However, large fish had either the lowest percentage increases or the highest percentage decreases in fork length, biomass, condition factor, total lipid weight, and percent lipids within all thermal treatments. The magnitude of the differences between small and large fish was highest in the warmest (9??C) water. We used bioenergetics simulations of juvenile steelhead growth to examine fish response to initial size, winter temperature, and food availability. Relatively warm water temperatures in winter, coupled with limited food availability, may present more of a physiological challenge to larger age-0 steelhead than to smaller fish. Our results suggest that achievement of large size before the start of a steelhead's first winter can have a cost under episodic conditions found across the wide ranges of latitude and elevation within this species' distribution.

Transactions of the American Fisheries Society↗
USGS2003

Historical changes in the Columbia River estuary based on sediment cores: feasibility studies

The importance of the Columbia River estuary to salmon, other fishes, migratory birds, and other species is fairly well established. Relatively little is known, however, about long-term, historic variations in biological processes and conditions within the estuary. For example, have conditions varied greatly with climatic regime shifts and how has dam construction on the Columbia River influenced biological communities over time? We conducted a feasibility study to see if sediment cores from the estuary could be aged and whether biological or contaminant indicators could be identified. Such information could be useful in understanding long-term environmental variation and in restoration studies.

Oregon, Washington↗
USGS2003

American shad in the Columbia River

American shad Alosa sapidissima from the Hudson River, New York, were introduced into the Sacramento River, California, in 1871 and were first observed in the Columbia River in 1876. American shad returns to the Columbia River increased greatly between 1960 and 1990, and recently 2-4 million adults have been counted per year at Bonneville Dam, Oregon and Washington State (river kilometer 235). The total return of American shad is likely much higher than this dam count. Returning adults migrate as far as 600 km up the Columbia and Snake rivers, passing as many as eight large hydroelectric dams. Spawning occurs primarily in the lower river and in several large reservoirs. A small sample found returning adults were 2-6 years old and about one-third of adults were repeat spawners. Larval American shad are abundant in plankton and in the nearshore zone. Juvenile American shad occur throughout the water column during night, but school near the bottom or inshore during day. Juveniles consume a variety of zooplankton, but cyclopoid copepods were 86% of the diet by mass. Juveniles emigrate from the river from August through December. Annual exploitation of American shad by commercial and recreational fisheries combined is near 9% of the total count at Bonneville Dam. The success of American shad in the Columbia River is likely related to successful passage at dams, good spawning and rearing habitats, and low exploitation. The role of American shad within the aquatic community is poorly understood. We speculate that juveniles could alter the zooplankton community and may supplement the diet of resident predators. Data, however, are lacking or sparse in some areas, and more information is needed on the role of larval and juvenile American shad in the food web, factors limiting adult returns, ocean distribution of adults, and interactions between American shad and endangered or threatened salmonids throughout the river. ?? 2003 by the American Fisheries Society.

Book chapter↗
USGS2003

Conditions for growth and survival of bull trout in Beulah Reservoir, Oregon. Annual report 2002

The Bureau of Reclamation (BOR) constructed Agency Valley Dam on the North Fork of the Malheur River in 1934-35, creating Beulah Reservoir. The project is operated and maintained by the Vale Irrigation District for irrigation and downstream flood control. There is currently no formal agreement for a minimum pool level at Beulah Reservoir, but project operators of Agency Valley Dam and BOR are considering management alternatives. Although the project is not operated for fish and wildlife values, the reservoir supports a rainbow trout Oncorhynchus mykiss fishery and also seasonally harbors an adfluvial population of bull trout Salvelinus confluentus (Oregon Department of Fish and Wildlife [ODFW], unpublished data). Bull trout were listed by the USFWS as a threatened species throughout the Columbia and Klamath river basins in 1998, and Oregon has listed the North Fork Malheur River population “Of Special Concern”.

Oregon↗
USGS2002

Resident fish assemblages in shallow shorelines of a Columbia River impoundment

During May-September 1995, we replicated an earlier (1984-85) study of fishes in shoreline habitats of the John Day Reservoir, Columbia River, to investigate fish assemblage structure at several spatial and temporal scales. A total of 37,400 resident fishes representing 24 taxa was collected in 359 beach seine hauls. Fish catch composition during 1984 and 1985 was very similar, but was greatly different from catch in 1995. During 1984-1985, four native taxa (chiselmouth, northern pikeminnow, suckers, and sand rollers) constituted more than 90% of the combined main-channel catch, with introduced taxa comprising only 1.3% of the main-channel catch. In contrast, during 1995 only 37.7% of the main-channel catch comprised chiselmouth, northern pikeminnow, suckers, and sand rollers, while 33.9% were introduced taxa, primarily sunfishes and yellow perch. This shift in catch composition was greatest in the lower reservoir where the 1995 catch was 61% introduced taxa. Although changes in species composition of near-shore reservoir fish assemblages over the 10-yr period appeared to be substantial, we are unsure of annual variability since we have only one season of sampling for comparison with the earlier study. The differences we observed could be a long-term response to reservoir aging, a short-term reaction to annual differences in hydrologic and thermal regimes, or simply the naturally varying reproductive success of some species.

Northwest Science↗
USGS2001

Density, aggregation, and body size of northern pikeminnow preying on juvenile salmonids in a large river

Predation by northern pikeminnow Ptychocheilus oregonensis on juvenile salmonids Oncorhynchus spp. occurred probably during brief feeding bouts since diets were either dominated by salmonids (>80% by weight), or contained other prey types and few salmonids (<5%). In samples where salmonids had been consumed, large rather than small predators were more likely to have captured salmonids. Transects with higher catch-per-unit of effort of predators also had higher incidences of salmonids in predator guts. Predators in two of three reservoir areas were distributed more contagiously if they had preyed recently on salmonids. Spatial and temporal patchiness of salmonid prey may be generating differences in local density, aggregation, and body size of their predators in this large river.

Journal of Fish Biology↗
USGS2001

Climate regimes and water temperature changes in the Columbia River: bioenergetic implications for predators of juvenile salmon

We examined how climatic regime shifts may have affected predation rates on juvenile Pacific salmonids (Oncorhynchus spp.) by northern squawfish (Ptychocheilus oregonensis, also called northern pikeminnow), smallmouth bass (Micropterus dolomieu), and walleye (Stizostedion vitreum) in the Columbia River. During 1933-1996, oceanic, coastal, and freshwater indices of climate were highly correlated, and an index for the Columbia River Basin suggested that climate shifts may have occurred about 1946, 1958, 1969, and 1977. Summer water temperature varied as much as 2??C between climate periods. We used a bioenergetics model for northern squawfish, the most important piscivore, to predict that predation on salmonids would have been 26-31% higher during two periods with relatively warm spring-summer water temperatures (1933-1946, 1978-1996) than during an extremely cold period (1947-1958). Predicted predation rates of northern squawfish were 68-96% higher in the warmest year compared with the coldest year. Predation rates of smallmouth bass and walleye on juvenile salmonids varied among climate periods similar to rates predicted for northern squawfish. Climatic effects need to be understood in both freshwater and nearshore marine habitats, since growth rates of salmon populations are especially sensitive to mortality during early life stages.

Columbia River Basin↗