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Geology topics

J. W. Jones

Publications and source records attributed to J. W. Jones.

12 recordsLinked to original sources
USGS2013

Landsat surface reflectance quality assurance extraction (version 1.7)

The U.S. Geological Survey (USGS) Land Remote Sensing Program is developing an operational capability to produce Climate Data Records (CDRs) and Essential Climate Variables (ECVs) from the Landsat Archive to support a wide variety of science and resource management activities from regional to global scale. The USGS Earth Resources Observation and Science (EROS) Center is charged with prototyping systems and software to generate these high-level data products. Various USGS Geographic Science Centers are charged with particular ECV algorithm development and (or) selection as well as the evaluation and application demonstration of various USGS CDRs and ECVs. Because it is a foundation for many other ECVs, the first CDR in development is the Landsat Surface Reflectance Product (LSRP). The LSRP incorporates data quality information in a bit-packed structure that is not readily accessible without postprocessing services performed by the user. This document describes two general methods of LSRP quality-data extraction for use in image processing systems. Helpful hints for the installation and use of software originally developed for manipulation of Hierarchical Data Format (HDF) produced through the National Aeronautics and Space Administration (NASA) Earth Observing System are first provided for users who wish to extract quality data into separate HDF files. Next, steps follow to incorporate these extracted data into an image processing system. Finally, an alternative example is illustrated in which the data are extracted within a particular image processing system.

Techniques and Methods↗
USGS2011

An approach to regional wetland digital elevation model development using a differential global positioning system and a custom-built helicopter-based surveying system

Accurate topographic data are critical to restoration science and planning for the Everglades region of South Florida, USA. They are needed to monitor and simulate water level, water depth and hydroperiod and are used in scientific research on hydrologic and biologic processes. Because large wetland environments and data acquisition challenge conventional ground-based and remotely sensed data collection methods, the United States Geological Survey (USGS) adapted a classical data collection instrument to global positioning system (GPS) and geographic information system (GIS) technologies. Data acquired with this instrument were processed using geostatistics to yield sub-water level elevation values with centimetre accuracy (±15 cm). The developed database framework, modelling philosophy and metadata protocol allow for continued, collaborative model revision and expansion, given additional elevation or other ancillary data.

Florida↗
USGS2011

EAARL topography-Potato Creek watershed, Georgia, 2010

This DVD contains lidar-derived first-surface (FS) and bare-earth (BE) topography GIS datasets of a portion of the Potato Creek watershed in the Apalachicola-Chattahoochee-Flint River basin, Georgia. These datasets were acquired on February 27, 2010.

Data Series↗
USGS2008

The use of local indicators of spatial association to improve LiDAR-derived predictions of potential amphibian breeding ponds

We examined whether spatially explicit information improved models that use LiDAR return signal intensity to discriminate in-pond habitat from terrestrial habitat at 24 amphibian breeding ponds. The addition of Local Indicators of Spatial Association (LISA) to LiDAR return intensity data significantly improved predictive models at all ponds, reduced residual error by as much as 74%, and appeared to improve models by reducing classification errors associated with types of in-pond vegetation. We conclude that LISA statistics can help maximize the information content that can be extracted from time resolved LiDAR return data in models that predict the occurrence of small, seasonal ponds. ?? Springer-Verlag 2008.

Journal of Geographical Systems↗
USGS2006

Chlorine toxicity to early life stages of freshwater mussels (Bivalvia: Unionidae)

Chlorine (Cl) is a highly toxic, widely used halogen disinfectant that is present in point-source pollution discharges from wastewater treatment plants and industrial facilities. The U.S. Environmental Protection Agency freshwater criteria for Cl are 19 ??g total residual Cl (TRC)/L as a maximum 1-h average concentration and 11 ??g TRC/L as a maximum 4-d average; however, toxicological data for unionids were not used in these calculations. To address this void in the data, we conducted acute tests with glochidia from several species and 21-d bioassays with three-month-old Epioblasma capsaeformis and three-, six-, and 12-month-old Villosa iris juveniles. The 24-h lethal concentration 50 values for glochidia were between 70 and 220 ??g TRC/L, which are 2.5 to 37 times higher than those reported in other studies for cladocerans. Significant declines in growth and survivorship were observed in the 21-d test with E. capsaeformis at 20 ??g TRC/L. Lowest-observed-adverse- effects concentrations in bioassays with juvenile V. iris were higher (30-60 ??g TRC/L) but showed a significant trend of declining toxicity with increased age. Although endpoints were above water quality criteria, the long life spans of unionids and potential implications of chronic exposure to endangered juvenile mussels still warrant concern. ?? 2006 SETAC.

Conference Paper↗
USGS2005

Patterns of genetic differentiation and conservation of the slabside pearlymussel, Lexingtonia dolabelloides (Lea, 1840) in the Tennessee River drainage

The restoration and recovery of imperiled mussel species will require the re-establishment of populations into historically occupied habitats. The possible existence of genetic differentiation among populations should be considered before inter-basin transfers are made. Eighty individuals of the federal candidate species Lexingtonia dolabelloides were sampled from populations in the North Fork Holston, Middle Fork Holston, Clinch, Paint Rock and Duck rivers of the Tennessee River basin in the southeastern United States. We sequenced 603 base-pairs of a mitochondrial DNA gene (ND-1) and 512 base-pairs of a nuclear DNA gene (ITS-1). Analyses of molecular variation (AMOVA) values for both genes indicated that the majority of variation in L. dolabelloides resided within populations (82.9-88.3%), with 11.7-17.1% of variation among populations. Haplotype frequencies differed significantly among populations for both genes sequenced. Clustering of haplotypes in minimum-spanning networks did not conform stringently to population boundaries, reflecting high within-population and low between-population variability. Maximum parsimony analysis did not identify any population as a monophyletic lineage. A Mantel test showed no significant correlation between geographical stream distance and genetic distance, thus not supporting a pattern of isolation-by-distance. Overall, results provided support to manage fragmented populations of L. dolabelloides in the Tennessee River drainage as two management units (MUs), but did not provide evidence for the existence of ESUs following published molecular criteria. ?? The Author 2005. Published by Oxford University Studies on behalf of The Malacological Society of London, all rights reserved.

Journal of Molluscan Studies↗
USGS2004

Life history and propagation of the endangered dromedary pearlymussel (Dromus dromas) (Bivalvia:Unionidae)

The reproduction, demography, and propagation of the endangered dromedary pearlymussel (Dromus dromas) (Lea, 1834) were studied in the Clinch and Powell rivers, Tennessee. Viable populations of the dromedary pearlymussel now occur only in the Clinch and Powell rivers; the species has been extirpated from the remaining portions of its range in the Cumberland and Tennessee river drainages. Females are long-term winter brooders, and they are gravid from October to June. Glochidia are contained in conglutinates that are red to white and resemble freshwater leeches or flatworms. Conglutinates are 20 to 40 mm long and are released through the excurrent aperture. Estimates of fecundity based on 7 gravid females collected from the Clinch River were 55,110 to 253,050 glochidia/mussel. The ages of 66 valves of D. dromas were determined by thin-sectioning and ranged from 3 to 25 y. Annual growth averaged 5 mm/y until age 10 and decreased to ???1.2 mm/ y thereafter. Nineteen fish species were tested for suitability as hosts for glochidia. Ten were confirmed as hosts through induced infestations of glochidia: black sculpin (Cottus baileyi), greenside darter (Etheostoma blennioides), fantail darter (Etheostoma flabellare), snubnose darter (Etheostoma simoterum), tangerine darter (Percina aurantiaca), blotchside logperch (Percina burtoni), logperch (Percina caprodes), channel darter (Percina copelandi), gilt darter (Percina evides), and Roanoke darter (Percina roanoka). Juveniles produced from these hosts were cultured in dishes held in nonrecirculating aquaculture systems containing fine sediment (<105 ??m) and were fed the green alga Nannochloropsis oculata every 2 d. Survival of 2810 newly metamorphosed juveniles was 836 (29.7%) after 1 to 2 wk.

Journal of the North American Benthological Societ↗
USGS2002

Life history and propagation of the endangered fanshell pearlymussel, Cyprogenia stegaria Rafinesque (Bivalvia: Unionidae)

Aspects of the reproduction, age, growth, fish hosts, and culture of juveniles were determined for the endangered fanshell pearlymussel, Cyprogenia stegaria Rafinesque, 1820, in the Clinch River, Tennessee. Glochidia of C. stegaria are contained in red, worm-like conglutinates that resemble oligochaetes. Conglutinates are 20 to 80 mm long and are released through the excurrent aperture. Estimated fecundity was 22,357 to 63,459 glochidia/mussel. Eighty-four valves of C. stegaria were thin-sectioned for aging; ages ranged from 6 to 26 y. Of 16 fish species tested, 9 hosts were identified through induced infestations of glochidia: mottled sculpin (Cottus bairdi), banded sculpin (Cottus carolinae), greenside darter (Etheostoma blennioides), snubnose darter (Etheostoma simoterum), banded darter (Etheostoma zonale), tangerine darter (Percina aurantiaca), blotchside logperch (Percina burtoni), logperch (Percina caprodes), and Roanoke darter (Percina roanoka). Newly metamorphosed juveniles were cultured in recirculating and nonrecirculating aquaculture systems within dishes containing sediments of 300 to 500 μm diameter (sand) or <105 μm diameter (silt), and fed either the green algae Neochloris oleoabundans or Scenedesmus quadricauda daily. Growth and survival of juvenile mussels were highest in the nonrecirculating aquaculture system, with a mean survival of 72% after 2 wk and 38% after 4 wk.

Journal of the North American Benthological Societ↗
USGS2001

Image and in situ data integration to derive sawgrass density for surface flow modelling in the Everglades, Florida, USA

The US Geological Survey is building models of the Florida Everglades to be used in managing south Florida surface water flows for habitat restoration and maintenance. Because of the low gradients in the Everglades, vegetation structural characteristics are very important and greatly influence surface water flow and distribution. Vegetation density is being evaluated as an index of surface resistance to flow. Digital multispectral videography (DMSV) has been captured over several sites just before field collection of vegetation data. Linear regression has been used to establish a relationship between normalized difference vegetation index (NDVI) values computed from the DMSV and field-collected biomass and density estimates. Spatial analysis applied to the DMSV data indicates that thematic mapper (TM) resolution is at the limit required to capture land surface heterogeneity. The TM data collected close to the time of the DMSV will be used to derive a regional sawgrass density map.

IAHS-AISH Publication↗
USGS2000

Image and in situ data integration to derive sawgrass density for surface flow modelling in the Everglades, Florida, USA

The US Geological Survey is building models of the Florida Everglades to be used in managing south Florida surface water flows for habitat restoration and maintenance. Because of the low gradients in the Everglades, vegetation structural characteristics are very important and greatly influence surface water flow and distribution. Vegetation density is being evaluated as an index of surface resistance to flow. Digital multispectral videography (DMSV) has been captured over several sites just before field collection of vegetation data. Linear regression has been used to establish a relationship between normalized difference vegetation index (NDVI) values computed from the DMSV and field-collected biomass and density estimates. Spatial analysis applied to the DMSV data indicates that thematic mapper (TM) resolution is at the limit required to capture land surface heterogeneity. The TM data collected close to the time of the DMSV will be used to derive a regional sawgrass density map.

IAHS-AISH Publication↗
USGS1997

Overview of USGS sediment research and monitoring capabilities

For more than a century the USGS, as its name implies, has been the leading federal earth science research organization for the Nation. With the recent addition to the USGS of the National Biological Service in October 1996, as the Biological Resources Division, the mission of the USGS has broadened and the Survey's research capabilities are strengthened considerably. The USGS is now in a position to provide objective and credible scientific information across the fields of geology, geophysics, hydrology, geography, and biology and to provide the science information in an integrated and truly multidisciplinary manner. The subject of sediment is one that is critical to nearly every activity in the USGS and is becoming increasingly important to society and protecting, sustaining, and restoring the Nation's natural resources. The purpose of this workshop is to focus on this common denominator, sedimentary research, and bring together investigators to examine areas of expertise and collaboration on existing studies and to explore potential for future scientific interaction across all four of the divisions. A brief summary of sediment research capability for each division follows.

Conference Paper↗