Geology topics

J. L. Macalady

Publications and source records attributed to J. L. Macalady.

4 recordsLinked to original sources

USGS2010

Shifting microbial community structure across a marine terrace grassland chronosequence, Santa Cruz, California

Changes in the biomass and structure of soil microbial communities have the potential to impact ecosystems via interactions with plants and weathering minerals. Previous studies of forested long-term (1000s – 100,000s of years) chronosequences suggest that surface microbial communities change with soil age. However, significant gaps remain in our understanding of long-term soil microbial community dynamics, especially for non-forested ecosystems and in subsurface soil horizons. We investigated soil chemistry, aboveground plant productivity, and soil microbial communities across a grassland chronosequence (65,000–226,000 yrs old) located near Santa Cruz, CA. Aboveground net primary productivity (ANPP) initially increased to a maximum and then decreased for the older soils. We used polar lipid fatty acids (PLFA) to investigate microbial communities including both surface (<0.1 m) and subsurface (≥0.2 m) soil horizons. PLFAs characteristic of Gram-positive bacteria and actinobacteria increased as a fraction of the microbial community with depth while the fungal fraction decreased relative to the surface. Differences among microbial communities from each chronosequence soil were found primarily in the subsurface where older subsurface soils had smaller microbial community biomass, a higher proportion of fungi, and a different community structure than the younger subsurface soil. Subsurface microbial community shifts in biomass and community structure correlated with, and were likely driven by, decreasing soil P availability and Ca concentrations, respectively. Trends in soil chemistry as a function of soil age led to the separation of the biological (≤1 m depth) and geochemical (>1 m) cycles in the old, slowly eroding landscape we investigated, indicating that this separation, commonly observed in tropical and subtropical ecosystems, can also occur in temperate climates. This study is the first to investigate subsurface microbial communities in a long-term chronosequence. Our results highlight connections between soil chemistry and both the aboveground and belowground parts of an ecosystem.

California↗

USGS2008

Changes in the soil C cycle at the arid-hyperarid transition in the Atacama Desert

We examined soil organic C (OC) turnover and transport across the rainfall transition from a biotic, arid site to a largely abiotic, hyperarid site. With this transition, OC concentrations decrease, and C cycling slows precipitously, both in surface horizons and below ground. The concentration and isotopic character of soil OC across this transition reflect decreasing rates of inputs, decomposition, and downward transport. OC concentrations in the arid soil increase slightly with depth in the upper meter, but are generally low and variable (???0.05%; total inventory of 1.82 kg m-2); OC-??14C values decrease from modern (+7???) to very 14C-depleted (-966???) with depth; and OC-??13C values are variable (-23.7??? to -14.1???). Using a transport model, we show that these trends reflect relatively rapid cycling in the upper few centimeters, and spatially variable preservation of belowground OC from root inputs, possibly during a previous, wetter climate supporting higher soil OC concentrations. In the driest soil, the OC inventory is the lowest among the sites (0.19 kg m-2), and radiocarbon values are 14C-depleted (-365??? to -696???) but show no trend with depth, indicating belowground OC inputs and long OC residence times throughout the upper meter (104 y). A distinct depth trend in ??13C values and OC/ON values within the upper 40 cm at the driest site may reflect photochemical alteration of organic matter at the soil surface, combined with limited subsurface decomposition and downward transport. We argue that while root inputs are preserved at the wetter sites, C cycling in the most hyperarid soil occurs through infrequent, rapid dissolved transport of highly photodegraded organic matter during rare rain events, each followed by a pulse of decomposition and subsequent prolonged drought. These belowground inputs are likely a primary control on the character, activity, and depth distribution of small microbial populations. While the lack of water is the dominant control on C cycling, very low C/N ratios of organic matter suggest that when rainfall occurs, hyperarid soils are effectively C limited. The preservation of fossil root fragments in the sediment beneath the driest soil indicates that wetter climate conditions preceded formation of this soil, and that vadose zone microbial activity has been extremely limited for the past 2 My. Copyright 2008 by the American Geophysical Union.

Journal of Geophysical Research G: Biogeosciences↗

USGS2008

Methane-producing microbial community in a coal bed of the Illinois Basin

A series of molecular and geochemical studies were performed to study microbial, coal bed methane formation in the eastern Illinois Basin. Results suggest that organic matter is biodegraded to simple molecules, such as H 2 and CO2, which fuel methanogenesis and the generation of large coal bed methane reserves. Small-subunit rRNA analysis of both the in situ microbial community and highly purified, methanogenic enrichments indicated that Methanocorpusculum is the dominant genus. Additionally, we characterized this methanogenic microorganism using scanning electron microscopy and distribution of intact polar cell membrane lipids. Phylogenetic studies of coal water samples helped us develop a model of methanogenic biodegradation of macromolecular coal and coal-derived oil by a complex microbial community. Based on enrichments, phylogenetic analyses, and calculated free energies at in situ subsurface conditions for relevant metabolisms (H2-utilizing methanogenesis, acetoclastic methanogenesis, and homoacetogenesis), H 2-utilizing methanogenesis appears to be the dominant terminal process of biodegradation of coal organic matter at this location. Copyright ?? 2008, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗

USGS2007

Rainfall limit of the N cycle on Earth

In most climates on Earth, biological processes control soil N. In the Atacama Desert of Chile, aridity severely limits biology, and soils accumulate atmospheric NO 3 − . We examined this apparent transformation of the soil N cycle using a series of ancient Atacama Desert soils (>2 My) that vary in rainfall (21 to <2 mm yr −1 ). With decreasing rainfall, soil organic C decreases to 0.3 kg C m −2 and biological activity becomes minimal, while soil NO 3 − and organic N increase to 4 kg N m −2 and 1.4 kg N m −2 , respectively. Atmospheric NO 3 − (Δ 17 O = 23.0‰) increases from 39% to 80% of total soil NO 3 − as rainfall decreases. These soils capture the transition from a steady state, biologically mediated soil N cycle to a dominantly abiotic, transient state of slowly accumulating atmospheric N. This transition suggests that oxidized soil N may be present in an even more arid and abiotic environment: Mars.

Global Biogeochemical Cycles↗