Geology topics

J. H. Johnson

Publications and source records attributed to J. H. Johnson.

At least 19 recordsLinked to original sources

USGS2017

Diet, feeding patterns, and prey selection of subyearling Atlantic salmon (Salmo salar) and subyearling chinook salmon (Oncorhynchus tshawytscha) in a tributary of Lake Ontario

Since juvenile Atlantic salmon ( Salmo salar ) and Chinook salmon ( Oncorhynchus tshawytscha ) occupy a similar habitat in Lake Ontario tributaries, we sought to determine the degree of diet similarity between these species in order to assess the potential for interspecific competition. Atlantic salmon, an historically important but currently extirpated component of the Lake Ontario fish community, are the focus of a bi-national restoration effort. Presently this effort includes the release of hatchery produced juvenile Atlantic salmon in Lake Ontario tributaries. These same tributaries support substantial numbers of naturally reproduced juvenile Pacific salmonids including Chinook salmon. Subyearling Atlantic salmon and subyearling Chinook salmon had significantly different diets during each of the three time periods examined. Atlantic salmon fed slightly more from the benthos than from the drift and consumed mainly chirononmids (47.0%) and ephemeropterans (21.1%). The diet of subyearling Chinook salmon was more closely associated with the drift and consisted mainly of chironomids (60.2%) and terrestrial invertebrates (16.0%). Low diet similarity between subyearling Atlantic salmon and subyearling Chinook salmon likely minimizes competitive interactions for food between these species in Lake Ontario tributaries. However, the availability of small prey such as chironomids which comprise over 50% of the diet of each species, soon after emergence, could constitute a short term resource limitation. To our knowledge this is the first study of interspecific diet associations between these two important salmonid species.

Journal of Applied Ichthyology↗

USGS2011

Distinguishing between stress-induced and structural anisotropy at Mount Ruapehu volcano, New Zealand

We have created a benchmark of spatial variations in shear wave anisotropy around Mount Ruapehu, New Zealand, against which to measure future temporal changes. Anisotropy in the crust is often assumed to be caused by stress-aligned microcracks, and the polarization of the fast quasi-shear wave ( ϕ ) is thus interpreted to indicate the direction of maximum horizontal stress, but can also be due to aligned minerals or macroscopic fractures. Changes in seismic anisotropy have been observed following a major eruption in 1995/96 and were attributed to changes in stress from the depressurization of the magmatic system. Three-component broadband seismometers have been deployed to complement the permanent stations that surround Ruapehu, creating a combined network of 34 three-component seismometers. This denser observational network improves the resolution with which spatial variations in seismic anisotropy can be examined. Using an automated shear wave splitting analysis, we examine local earthquakes in 2008. We observe a strong azimuthal dependence of ϕ and so introduce a spatial averaging technique and two-dimensional tomography of recorded delay times. The anisotropy can be divided into regions in which ϕ agrees with stress estimations from focal mechanism inversions, suggesting stress-induced anisotropy, and those in which ϕ is aligned with structural features such as faults, suggesting structural anisotropy. The pattern of anisotropy that is inferred to be stress related cannot be modeled adequately using Coulomb modeling with a dike-like inflation source. We suggest that the stress-induced anisotropy is affected by loading of the volcano and a lithospheric discontinuity.

Journal of Geophysical Research B: Solid Earth↗

USGS2011

Diel feeding chronology of six fish species in the Juniata River, Pennsylvania

We examined diel feeding chronology of six fish species in the Juniata River, Pennsylvania. Ephemeropteran nymphs were the major prey of redbreast sunfish ( Lepomis auritus ; 70.5%) and smallmouth bass ( Micropterus dolomieu ; 59.7%) during each of six 4-h intervals over a 24-h period. The main dietary component of mimic shiner ( Notropis volucellus ) was chironomids (42.3%), whereas spotfin shiner ( Cyprinella spiloptera ) mainly ate terrestrial invertebrates (50.2%). Juvenile white sucker ( Catostomus commersoni ) exhibited substantial diel variation in diet composition with some prey taxa composing the entire diet during some 4-h intervals and being completely absent from the diet during other periods. Bluntnose minnow ( Pimephales notatus ) contained mostly detritus (75.5%). Interspecific diel diet overlap (Cγ) was low among the six species except for smallmouth bass-redbreast sunfish (0.735). Mimic shiner ([xbar] = 0.302) had the highest diet overlap with other species and bluntnose minnow ([xbar] = 0.134) had the least similar. Smallmouth bass, redbreast sunfish, white sucker, and spotfin shiner all had diurnal feeding peaks. Peak food consumption of mimic shiner and bluntnose minnow occurred at midnight. Our results indicate that because of diel variation in diet composition and feeding periodicity for these six species, dietary analysis conducted at only one interval would not provide an accurate representation of the diet of these species.

Pennsylvania↗

USGS2011

Ontogenetic and diel variation in stream habitat use by brook trout ( Salvelinus fontinalis ) in a headwater stream

Although considerable information exists on habitat use by stream salmonids, only a small portion has quantitatively examined diurnal and nocturnal habitat variation. We examined diel variation in habitat use by age-0 and age-1+ brook trout ( Salvelinus fontinalis ) during summer and autumn in a headwater stream in northern Pennsylvania. Habitat variables measured included cover, depth, substrate, and velocity. The most pronounced diel variation occurred in the use of cover during both seasons. Both age-0 brook trout and age-1+ trout were associated with less cover at night. Age-0 brook trout occupied swifter water during the day than at night during both seasons, but the difference was not significant. Increased cover, depth, and substrate size governed the habitat of age-1+ brook trout. Our findings support the need for a better understanding of diel differences in habitat use of stream salmonids when considering habitat enhancement and protection.

Journal of Freshwater Ecology↗

USGS2010

Occurrence of the Great Lake's most recent invader, Hemimysis anomala , in the diet of fishes in southeastern Lake Ontario

The Ponto-Caspian mysid, Hemimysis anomala , was first observed in southeastern Lake Ontario in May 2006. During July and August 2007, gill nets were fished in 6 to 8 m of water at two locations of known Hemimysis colonization in southeastern Lake Ontario to determine if fish that consume macroinvertebrates were beginning to include this new invasive mysid in their diets. Of nine fish species captured in August, September, and October 2007, three species had consumed Hemimysis : alewife ( Alosa pseudoharengus ), rock bass ( Ambloplites rupestris ), and yellow perch ( Perca flavescens ); and six species had not: round goby Apollonia melanostoma , smallmouth bass Micropterus dolomieu , spottail shiner Notropis hudsonius , gizzard shad Dorosoma cepedianum , white perch Morone americana and log perch Percina caprodes . Diets of alewives from all samples were composed predominantly of Hemimysis (69.6% -100% frequency of occurrence, 46.0%–74.5% dry weight diet composition). Two of 6 rock bass stomachs sampled in August contained ≥ 98.9% Hemimysis (10 and 40 individuals each) and one of 61 yellow perch stomachs sampled in September contained 10.0% Hemimysis (6 individuals) and 90.0% fish. While Hemimysis were observed only sparsely in the diet of most nearshore fish, their predominance in alewife diets and their omnivorous feeding behavior indicated that they have the potential to alter energy flow in Great Lakes' foodwebs.

Journal of Great Lakes Research↗

USGS2010

Ontogenetic Variation in Food Consumption of Rusty Crayfish (Orconectes rusticus) in a Central New York Stream

We examined feeding periodicity of three size groups of the rusty crayfish (Orconectes rusticus) at four-hour intervals over a 28-hour period during July in a headwater stream of the Susquehanna River drainage in central New York. Feeding activity was expressed as the ratio of stomach weight divided by the crayfish wet weight. The diel food consumption patterns of all three size groups of rusty crayfish (i.e., ≤ 10 mm, 11–20 mm, and > 20 mm carapace length) were significantly different. Peak feeding of the smallest crayfish occurred during crepuscular periods. Food consumption of the intermediate size crayfish was highest at 2000 h, and feeding of large crayfish was consistently high from 1200 h to 0400 h. Feeding intensity of both small and intermediate size crayfish was highest when feeding intensity of large crayfsh was lowest. Ontogenetic differences in feeding periodicity may be associated with predation pressure from large rusty crayfish on smaller individuals.

Journal of Freshwater Ecology↗

USGS2009

Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter

The diurnal winter habitat of three species of juvenile salmonids was examined in a tributary of Skaneateles Lake, NY to compare habitat differences among species and to determine if species/age classes were selecting specific habitats. A total of 792 observations were made on the depth, velocity, substrate and cover (amount and type) used by sympatric subyearling Atlantic salmon, subyearling brown trout and subyearling and yearling rainbow trout. Subyearling Atlantic salmon occurred in shallower areas with faster velocities and less cover than the other salmonid groups. Subyearling salmon was also the only group associated with substrate of a size larger than the average size substrate in the study reach during both winters. Subyearling brown trout exhibited a preference for vegetative cover. Compared with available habitat, yearling rainbow trout were the most selective in their habitat use. All salmonid groups were associated with more substrate cover in 2002 under high flow conditions. Differences in the winter habitat use of these salmonid groups have important management implications in terms of both habitat protection and habitat enhancement.

New York↗

USGS2009

Spatial and temporal variation in distribution of larval lake whitefish in eastern Lake Ontario: signs of recovery?

The lake whitefish ( Coregonus clupeaformis ) is one of the native Lake Ontario fishes that declined severely over the past century. Recent evidence of larval lake whitefish production in a historic spawning area (Chaumont Bay) might signal a recovery of this species in New York waters. We surveyed coastal and open water areas to evaluate densities and estimate total abundance of larval lake whitefish in Chaumont Bay. Other historic spawning areas and embayments with appropriate spawning and nursery habitat were also surveyed, but only a few larvae were found outside of Chaumont Bay. Lake whitefish larvae were found in every embayment sampled within Chaumont Bay, with larval densities of nearly 600/1000 m 2 in some samples. Greatest abundances occurred in the northern sectors and near the mouth of the bay. Open water densities were generally less than half that of nearshore sites. The total bay-wide estimate for 2005 was approximately 644,000 lake whitefish larvae, but dropped to 230,000–400,000 in 2006 and 2007, respectively. Mean larval growth rates (0.36 mm/day) did not differ by year, but were consistently higher in early May than in late April. Lake whitefish production in Chaumont Bay is encouraging for this species, but the cause and persistence of the decline after 2005 can be determined only by continued monitoring. Other possible bottlenecks of survival may exist at juvenile and adult stages and could significantly affect recruitment dynamics. This species is sensitive to normal climatic fluctuations and increased variability associated with global climatic change could make winter nursery conditions unfavorable for this species.

Journal of Great Lakes Research↗

USGS2009

Predation by fallfish ( Semotilus corporalis ) on Pacific salmon eggs in the Salmon River, New York

Fallfish ( Semotilus corporalis ) are the largest native cyprinid in the northeastern United States and are the most abundant native species in the Salmon River, New York. The Salmon River is a high-quality spawning and nursery river for Pacific salmon ( Oncorhynchus spp.) migrating from Lake Ontario. Because of the large number of Pacific salmon spawning in the river in the fall extensive redd superimposition occurs resulting in salmonid eggs being available on the substrate. We examined the fall diet of 647 fallfish in 2007 and 2008 to determine the extent of predation on Pacific salmon eggs. The contribution of eggs in the diet significantly increased once fallfish attained a size of 100 mm total length. The largest size category of fallfish examined (≥150 mm) had the highest proportion (86.1%) of salmon eggs in their diet. The contribution of Zooplankton and chironomids in the diet of fallfish decreased with fish size. Except for the two largest groups of fallfish examined (i.e., 100–149 mm and ≥150 mm) diet overlap among size groups was low. The high contribution in the diet during the fall and high caloric value of Pacific salmon eggs could increase growth and survival of this species in the Salmon River.

New York↗

USGS2009

Influence of diet of double-crested cormorants on thiamine, lead, and mineral contents of their eggs

Throughout much of the Great Lakes basin, reproduction of several fish species is impaired by deficiency of thiamine in their eggs, an effect attributed to consumption of thiaminase-containing forage species, primarily alewife ( Alosa pseudoharengus ). Because the double-crested cormorant ( Phalacrocorax auritus ) nesting on islands in Lake Ontario is known to consume considerable amounts of alewife, we examined cormorant food habits and measured thiamine content in eggs collected in 1999 from six separate nests of cormorants from colonies near Lake Ontario and contrasted them with food habits and eggs of cormorants from Oneida Lake where the alewife is rare. Thiamine concentrations in eggs varied between 4.31 and 11.24 nmoles/g with no significant ( P >0.18) difference between mean concentrations for Lake Ontario and Oneida Lake (8.08 vs 8.36 nmoles/g) even though alewife comprised approximately 65 vs 0 % of their diets, respectively. Consumption of other thiaminase-containing species was minor in both lakes. Therefore, consumption of alewife and other thiaminase containing fishes by cormorants on Lake Ontario did not appear to significantly impair the levels of thiamine in their eggs. However, we found that the concentration of thiamine in eggs (T; nmoles/g) was inversely related ( P <0.02) to lead (Pb) concentration (µg/g) according to the equation: T = -3.142 Pb + 16.25. This relationship may reflect the known ability of thiamine to chelate lead and increase its excretion.

Journal of Freshwater Ecology↗

USGS2008

Seasonal habitat use by brook trout, Salvelinus fontinalis (Mitchill), in a second-order stream

Seasonal habitat use by over-yearling and under-yearling brook trout, Salvelinus fontinalis (Mitchill), was examined in a second-order stream in north-central Pennsylvania, USA. The habitat occupied by brook trout and available habitat were determined in a 0.5-km stream reach during the spring, summer and autumn of 1989 and the spring and summer of 1990. Cover, depth, substrate and velocity were quantified from over 2000 observations of individual brook trout. Habitat used by under-yearling brook trout was more uniform between seasons and years than that used by over-yearling brook trout. Over-yearling brook trout occupied areas with more cover and greater depth than did under-yearling brook trout, suggesting ontogenetic shifts in these variables. Differences for velocity and substrate were not as great as those for cover and depth. The selection of areas with low water velocities governed trout habitat use in spring, whereas cover and depth were the most important habitat variables in summer and autumn. Principal component analysis showed that available habitat and trout habitat centroids diverged most in spring, indicating that habitat selection by brook trout may be greatest at this time.

Fisheries Management and Ecology↗

USGS2008

Diet composition and feeding periodicity of wild and hatchery subyearling Chinook salmon in Lake Ontario

Diel feeding periodicity, daily ration, and diet composition of wild and hatchery subyearling Chinook salmon Oncorhynchus tshawytscha were examined in Lake Ontario and the Salmon River, New York. The diet of wild riverine salmon was composed mainly of aquatic invertebrates (63.4%), mostly ephemeropterans (25.8%), chiromomids (15.8%), and trichopterans (8.3%). The diet of riverine Chinook was more closely associated with the composition of drift samples rather than bottom samples, suggesting mid-water feeding. In Lake Ontario terrestrial invertebrates were more important in the diet of hatchery Chinook (49.0%) than wild salmon (30.5%) and diet overlap between hatchery and wild salmon was low (0.46%). The diet of both hatchery and wild Chinook salmon was more closely associated with the composition of mid-water invertebrate samples rather than benthic core samples, indicating mid-water and surface feeding. Hatchery Chinook salmon consumed significantly less food (P < 0.05) than wild Chinook salmon in the lake and in the river, and wild salmon from Lake Ontario consumed more food than wild salmon in the Salmon River. Peak feeding of wild Chinook salmon occurred between 1200-1600 hours in Lake Ontario and between 1600-2000 hours in the Salmon River; there was no discernable feeding peak for the hatchery Chinook in Lake Ontario. Hatchery Chinook salmon also had the least diverse diet over the 24-hour sample period. These results suggest that at 7 days post-stocking hatchery Chinook salmon had not yet fully adapted to their new environment.

Journal of Great Lakes Research↗

USGS2008

Diel diet composition and feeding activity of round goby in the nearshore region of Lake Ontario

Expansion of the invasive round goby Apollonia melanostoma (=Neogobius melanostomus) throughout the Great Lakes drainage has created considerable concern among fisheries management agencies. These concerns have led to several studies on the biology and impact of the goby in the basin. However, little information exists on diel patterns in food consumption of the round goby. We examined the diets of 300 round gobies collected during crepuscular, diurnal, and nocturnal periods in Lake Ontario. There was little variation in the diel diet composition of the goby, as chironomid larvae were the major prey consumed during each period. Feeding intensity of the round goby was significantly (P<0.05) greater at night than during crepuscular or diurnal periods.

Journal of Freshwater Ecology↗

USGS2008

Influence of summer water-level variability on St. Lawrence River-wetland fish assemblages

Water-level and associated variability are substantial influences on wetland and shallow aquatic communities. The Akwesasne Wetland Complex is an extensive St. Lawrence River system affected by water regulation. The responses of fish assemblages to short-term summer water-level variation were examined throughout this section of the St. Lawrence River and its tributaries. An influence of water-level variability was detected on abundance of three common species [bluntnose minnow (Pimephales notatus), rock bass (Amboplites rupestris), and white sucker (Catastomus commersonii)] and explained 30-44% of variation. This influence has implications for water regulation and natural resource management, and a larger scope evaluation may reveal more extensive effects.

Journal of Freshwater Ecology↗

USGS2007

Diel periodicity of drift of larval fishes in tributaries of Lake Ontario

Diel patterns of downstream drift were examined during mid-June in three tributaries of Lake Ontario. Larval fishes were collected in drift nets that were set in each stream for 72 consecutive hours and emptied at 4-h intervals. Fantail darter (Ethostoma flabellare) and blacknose dace (Rhinichthys atractulus) were the two most abundant native stream fishes and were two of the three species collected in the ichthyoplankton drift. Fantail darter larvae comprised 100%, 98.9%, and 70.2% of the ichthyoplankton in the three streams. Most larval fishes (96%) drifted at night with peak catches occurring at 2400h in Orwell Brook and Trout Brook and 0400h in Little Sandy Creek. Based on stream temperatures, peak spawning and larval drift of blacknose dace probably occurred later in the season.

Journal of Freshwater Ecology↗

USGS2007

Comparative diets of subyearling Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ) in the Salmon River, New York

Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ) have established naturalized populations throughout the Great Lakes. Young-of-year of these species occur sympatrically for about one month in Lake Ontario tributaries. This study examined the diets of subyearling Chinook salmon and steelhead relative to available food in the Salmon River, New York. Terrestrial invertebrates and trichopterans were the major prey of Chinook salmon, whereas steelhead fed primarily on baetid nymphs and chironomid larvae. Diet overlap was low (0.45) between the species. The diet of Chinook was closely associated to the composition of the drift (0.88). Steelhead diet drew equally from the drift and benthos during the first year of the study, but more closely matched the benthos during the second year. Differences in prey selection, perhaps associated with differences in fish size, in addition to apparent differences in feeding mode (drift versus benthic), likely reduce competitive interactions between these species.

Journal of Great Lakes Research↗

USGS2006

Digestion of larval American shad by cyprinids

Cyprinids have pharyngeal teeth for grinding food before swallowing and a continuous gut with no discrete stomach. This digestive tract structure, as well as the feeding behavior traits shown by cyprinids, makes it difficult to identify and measure the amount of food consumed by these fishes. The relations among quantity of food in cyprinid gut, time after feeding and predator size were described by log-linear multiple regression. The number of intact American shad ( Alosa sapidissima (Wilson)) larvae eaten in laboratory experiments was estimated by extrapolating the regression for the amount of food in the gut over time for predators of various size. The numbers of larval American shad in guts of fish captured in the Juniata River, Pennsylvania, were not significantly different from those estimated with the equations derived from laboratory data. In view of their abundance in rivers and their potential digestion rate for larval fish, cyprinids can be expected to have a marked influence on reducing the numbers of larval American shad.

Ecology of Freshwater Fish↗

USGS2006

Behavioral changes associated with suboptimal prey densities for larval American shad

Laboratory studies were conducted to determine the effects of suboptimal prey density and length of prey-deprivation period on swimming, feeding, and social behavior in larval American shad. Alosa sapidissima. Replicated prey-density treatments of 1,000, 500, and 0 Artemia nauplii/liter and deprivation periods of 0,2, and 4 days were established for an 8-day period. The duration or frequency of 11 behavior patterns was quantified with an event recorder during the experiment. Exposure to suboptimal prey densities affected three categories of larval behavior: swimming activities (pivot and dart), interaction with other larvae (escape or avoid), and stereotypical feeding responses (sigmoid and lunge). Location of a food patch, simulated by the sudden introduction of prey to aquaria, affected the frequency of feeding responses more than other categories of behavior. The patch model was supported as a foraging strategy in larvae. The ontogeny of prey deprivation was evidenced primarily by changes in swimming activity (reduced pivot and dart frequencies), though feeding responses (particularly fixate) were also diminished. Deprivation-induced loss of pivot and fixate was an irreversible, pathological effect of starvation. Deprivation also resulted in greater vertical orientation (head up, 42°) of larvae than non-deprived larvae (21–29°). These changes in behavior may result in less effective escape from predators, location of food patches, or pursuit and capture of prey items in riverine habitats.

Ecology of Freshwater Fish↗