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Geology topics

J. C. Brock

Publications and source records attributed to J. C. Brock.

29 records · Page 2Linked to original sources
USGS2009

A multiscale analysis of coral reef topographic complexity using lidar-derived bathymetry

Coral reefs represent one of the most irregular substrates in the marine environment. This roughness or topographic complexity is an important structural characteristic of reef habitats that affects a number of ecological and environmental attributes, including species diversity and water circulation. Little is known about the range of topographic complexity exhibited within a reef or between different reef systems. The objective of this study was to quantify topographic complexity for a 5-km x 5-km reefscape along the northern Florida Keys reef tract, over spatial scales ranging from meters to hundreds of meters. The underlying dataset was a 1-m spatial resolution, digital elevation model constructed from lidar measurements. Topographic complexity was quantified using a fractal algorithm, which provided a multi-scale characterization of reef roughness. The computed fractal dimensions ( D ) are a measure of substrate irregularity and are bounded between values of 2 and 3. Spatial patterns in D were positively correlated with known reef zonation in the area. Landward regions of the study site contain relatively smooth ( D ≈ 2.35) flat-topped patch reefs, which give way to rougher ( D ≈ 2.5), deep, knoll-shaped patch reefs. The seaward boundary contains a mixture of substrate features, including discontinuous shelf-edge reefs, and exhibits a corresponding range of roughness values (2.28 ≤ D ≤ 2.61).

Journal of Coastal Research↗
USGS2008

Patch-reef morphology as a proxy for Holocene sea-level variability, Northern Florida Keys, USA

A portion of the northern Florida Keys reef tract was mapped with the NASA Experimental Advanced Airborne Research Lidar (EAARL) and the morphology of patch reefs was related to variations in Holocene sea level. Following creation of a lidar digital elevation model (DEM), geospatial analyses delineated morphologic attributes of 1,034 patch reefs (reef depth, basal area, height, volume, and topographic complexity). Morphometric analysis revealed two morphologically different populations of patch reefs associated with two distinct depth intervals above and below a water depth of 7.7 m. Compared to shallow reefs, the deep reefs were smaller in area and volume and showed no trend in topographic complexity relative to water depth. Shallow reefs were more variable in area and volume and became flatter and less topographically complex with decreasing water depth. The knoll-like morphology of deep reefs was interpreted as consistent with steady and relatively rapidly rising early Holocene sea level that restricted the lateral growth of reefs. The morphology of shallow 'pancake-shaped' reefs at the highest platform elevations was interpreted as consistent with fluctuating sea level during the late Holocene. Although the ultimate cause for the morphometric depth trends remains open to interpretation, these interpretations are compatible with a recent eustatic sea-level curve that hindcasts fluctuating late Holocene sea level. Thus it is suggested that the morphologic differences represent two stages of reef accretion that occurred during different sea-level conditions. ?? 2008 Springer-Verlag.

Coral Reefs↗
USGS2008

Utility of shallow-water ATRIS images in defining biogeologic processes and self-similarity in skeletal scleractinia, Florida reefs

A recently developed remote-sensing instrument acquires high-quality digital photographs in shallow-marine settings within water depths of 15 m. The technology, known as the Along-Track Reef-Imaging System, provides remarkably clear, georeferenced imagery that allows visual interpretation of benthic class (substrates, organisms) for mapping coral reef habitats, as intended. Unforeseen, however, are functions new to the initial technologic purpose: interpr??table evidence for real-time biogeologic processes and for perception of scaled-up skeletal self-similarity of scleractinian microstructure. Florida reef sea trials lacked the grid structure required to map contiguous habitat and submarine topography. Thus, only general observations could be made relative to times and sites of imagery. Degradation of corals was nearly universal; absence of reef fish was profound. However, ???1% of more than 23,600 sea-trial images examined provided visual evidence for local environs and processes. Clarity in many images was so exceptional that small tracks left by organisms traversing fine-grained carbonate sand were visible. Other images revealed a compelling sense, not yet fully understood, of the microscopic wall structure characteristic of scleractinian corals. Conclusions drawn from classifiable images are that demersal marine animals, where imaged, are oblivious to the equipment and that the technology has strong capabilities beyond mapping habitat. Imagery acquired along predetermined transects that cross a variety of geomorphic features within depth limits will ( 1) facilitate construction of accurate contour maps of habitat and bathymetry without need for ground-truthing, (2) contain a strong geologic component of interpreted real-time processes as they relate to imaged topography and regional geomorphology, and (3) allow cost-effective monitoring of regional- and local-scale changes in an ecosystem by use of existing-image global-positioning system coordinates to re-image areas. Details revealed in the modern setting have taphonomic implications for what is often found in the geologic record.

Conference Paper↗
USGS2006

Airborne lidar sensing of massive stony coral colonies on patch reefs in the northern Florida reef tract

In this study we examined the ability of the NASA Experimental Advanced Airborne Research Lidar (EAARL) to discriminate cluster zones of massive stony coral colonies on northern Florida reef tract (NFRT) patch reefs based on their topographic complexity (rugosity). Spatially dense EAARL laser submarine topographic soundings acquired in August 2002 were used to create a 1-m resolution digital rugosity map for adjacent NFRT study areas characterized by patch reefs (Region A) and diverse substratums (Region B). In both regions, sites with lidar-sensed rugosities above 1.2 were imaged by an along-track underwater videography system that incorporated the acquisition of instantaneous GPS positions. Subsequent manual interpretation of videotape segments was performed to identify substratum types that caused elevated lidar-sensed rugosity. Our study determined that massive coral colony formation, modified by subsequent physical and biological processes that breakdown patch reef framework, was the primary source of topographic complexity sensed by the EAARL in the NFRT. Sites recognized by lidar scanning to be topographically complex preferentially occurred around the margins of patch reefs, constituted a minor fraction of the reef system, and usually reflected the presence of massive coral colonies in cluster zones, or their derivatives created by mortality, bioerosion, and physical breakdown.

Florida↗
USGS2006

Northern Florida reef tract benthic metabolism scaled by remote sensing

Holistic rates of excess organic carbon production (E) and calcification for a 0.5 km 2 segment of the backreef platform of the northern Florida reef tract (NFRT) were estimated by combining biotope mapping using remote sensing with community metabolic rates determined with a benthic incubation system. The use of ASTER multispectral satellite imaging for the spatial scaling of benthic metabolic processes resulted in errors in E and net calcification (G) of 48 and 431% respectively, relative to estimates obtained using AISA hyperspectral airborne scanning. At 19 and 125%, the E and G errors relative to the AISA-based estimates were less pronounced for an analysis that used IKONOS multispectral satellite imagery to spatially extrapolate the chamber process measurements. Our scaling analysis indicates that the holistic calcification rate of the backreef platform of the northern Florida reef tract is negligible at 0.07 g CaCO 3 m -2 d -1 . All of the mapped biotopes in this reef zone are net heterotrophic, resulting in an estimated holistic excess production rate of -0.56 g C m -2 d -1 , and an overall gross primary production to respiration ratio of 0.85. Based on our finding of ubiquitous heterotrophy, we infer that the backreef platform of the NFRT is a sink for external inputs of suspended particulate organic matter. Further, our results suggest that the inward advection of inorganic nutrients is not a dominant forcing mechanism for benthic biogeochemical function in the NFRT. We suggest that the degradation of the northern Florida reef tract may parallel the community phase shifts documented within other reef systems polluted by organic detritus.

Florida↗
USGS2004

Use of remote sensing techniques to determine the effects of grazing on vegetation cover and dune elevation at assateague island national seashore: Impact of horses

The effects of grazing by feral horses on vegetation and dune topography at Assateague Island National Seashore were investigated using color-infrared imagery, lidar surveys, and field measurements. Five pairs of fenced and unfenced plots (300 m2) established in 1993 on sand flats and small dunes with similar elevation, topography, and vegetation cover were used for this study. Color-infrared imagery from 1998 and field measurements from 2001 indicated that there was a significant difference in vegetation cover between the fenced and unfenced plot-pairs over the study period. Fenced plots contained a higher percentage of vegetation cover that was dominated by American beachgrass (Ammophila breviligulata). Lidar surveys from 1997, 1999, and 2000 showed that there were significant differences in elevation and topography between fenced and unfenced plot-pairs. Fenced plots were, on average, 0.63 m higher than unfenced plots, whereas unfenced plots had generally decreased in elevation after establishment in 1993. Results demonstrate that feral horse grazing has had a significant impact on dune formation and has contributed to the erosion of dunes at Assateague Island. The findings suggest that unless the size of the feral horse population is reduced, grazing will continue to foster unnaturally high rates of dune erosion into the future. In order to maintain the natural processes that historically occurred on barrier islands, much larger fenced exclosures would be required to prevent horse grazing. ?? 2004 Springer Science+Business Media, Inc.

Environmental Management↗
USGS2004

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

Coral Reefs↗
USGS2001

Recognition of fiducial surfaces in lidar surveys of coastal topography

A new method for the recognition and mapping of surfaces in coastal landscapes that provide accurate and low variability topographic measurements with respect to airborne lidar surveys is described and demonstrated in this paper. Such surfaces are herein termed "fiducial" because they can represent reference baseline morphology in Studies of coastal change due to natural or anthropogenic causes. Non-fiducial surfaces may also be identified in each separate lidar survey to be used in a given geomorphic change analysis. Sites that are non-fiducial in either or both lidar surveys that bracket the time period under investigation may be excluded from consideration in subsequent calculations of survey-to-survey elevation differences to eliminate spurious indications of landscape change. This new analysis method, or lidar fiducial surface recognition (LFSR) algorithm, is intended to more fully enable the non-ambiguous Use of topographic lidar in a range of coastal investigations. The LFSR algorithm may be widely applied, because it is based solely on the information inherent in the USGS/NASA/NOAA airborne topographic lidar coverage that exists for most of the contiguous U.S. coastline.

Photogrammetric Engineering and Remote Sensing↗
USGS1999

Variations in water clarity and bottom albedo in Florida Bay from 1985 to 1997

Following extensive seagrass die-offs of the late 1980s and early 1990s, Florida Bay reportedly had significant declines in water clarity due to turbidity and algal blooms. Scant information exists on the extent of the decline, as this bay was not investigated for water quality concerns before the die-offs and limited areas were sampled after the primary die-off. We use imagery from the Advanced Very High Resolution Radiometer (AVHRR) to examine water clarity in Florida Bay for the period 1985 to 1997. The AVHRR provides data on nominal water reflectance and estimated light attenuation, which are used here to describe turbidity conditions in the bay on a seasonal basis. In situ observations on changes in seagrass abundance within the bay, combined with the satellite data, provide additional insights into losses of seagrass. The imagery shows an extensive region to the west of Florida Bay having increased reflectance and light attenuation in both winter and summer begining in winter of 1988. These increases are consistent with a change from dense seagrass to sparse or negligible cover. Approximately 200 km 2 of these offshore seagrasses may have been lost during the primary die-off (1988 through 1991), significantly more than in the bay. The imagery shows the distribution and timing of increased turbidity that followed the die-offs in the northwestern regions of the bay, exemplified in Rankin Lake and Johnson Key Basin, and indicates that about 200 km 2 of dense seagrass may have been lost or severely degraded within the bay from the start of the die-off. The decline in water clarity has continued in the northwestern bay since 1991. The area west of the Everglades National Park boundaries has shown decreases in both winter turbidity and summer reflectances, suggestive of partial seagrass recovery. Areas of low reflectance associated with a major Syringodium filiforme seagrass meadow north of Marathon (Vaca Key, in the Florida Keys) appear to have expanded westward toward Big Pine Key, indicating changes in the bottom cover from before the die-off. The southern and eastern sections of the Bay have not shown significant changes in water clarity or bottom albedo throughout the entire time period.

Florida↗