Geology topics

Hiram W. Li

Publications and source records attributed to Hiram W. Li.

5 recordsLinked to original sources

USGS2017

Fish assemblages

Methods to sample fishes in stream ecosystems and to analyze the raw data, focusing primarily on assemblage-level (all fish species combined) analyses, are presented in this chapter. We begin with guidance on sample site selection, permitting for fish collection, and information-gathering steps to be completed prior to conducting fieldwork. Basic sampling methods (visual surveying, electrofishing, and seining) are presented with specific instructions for estimating population sizes via visual, capture-recapture, and depletion surveys, in addition to new guidance on environmental DNA (eDNA) methods. Steps to process fish specimens in the field including the use of anesthesia and preservation of whole specimens or tissue samples (for genetic or stable isotope analysis) are also presented. Data analysis methods include characterization of size-structure within populations, estimation of species richness and diversity, and application of fish functional traits. We conclude with three advanced topics in assemblage-level analysis: multidimensional scaling (MDS), ecological networks, and loop analysis.

Book chapter↗

USGS2002

Landscapes to riverscapes: bridging the gap between research and conservation of stream fishes

Rivers and streams, by their very nature long ribbons of aquatic habitat, are inherently difficult to study. Approaching the banks of a flowing-water (lotic) system, one can see only a short fragment of the entire stream, from one bend to another, and can gain little appreciation for important features that lie beyond view. Moreover, materials transported downstream by the flow, and organisms traveling up or down the hydraulic highway, are soon gone from the reach and the opportunity to study them is often lost. Lakes present their own challenges for study, but by contrast to streams, one can usually see large expanses from shore that encompass all major habitats needed for aquatic organisms to complete their life history, such as gravel shoals, beds of aquatic vegetation, and open water habitats

BioScience↗

USGS1999

Multiscale thermal refugia and stream habitat associations of chinook salmon in northwestern Oregon

We quantified distribution and behavior of adult spring chinook salmon ( Oncorhynchus tshawytscha ) related to patterns of stream temperature and physical habitat at channel-unit, reach-, and section-level spatial scales in a wilderness stream and a disturbed stream in the John Day River basin in northeastern Oregon. We investigated the effectiveness of thermal remote sensing for analyzing spatial patterns of stream temperature and assessed habitat selection by spring chinook salmon, evaluating whether thermal refugia might be responsible for the persistence of these stocks in rivers where water temperatures frequently exceed their upper tolerance levels (25°C) during spawning migration. By presenting stream temperature and the ecology of chinook salmon in a historical context, we could evaluate how changes in riverine habitat and thermal spatial structure, which can be caused by land-use practices, may influence distributional patterns of chinook salmon. Thermal remote sensing provided spatially continuous maps of stream temperature for reaches used by chinook salmon in the upper subbasins of the Middle Fork and North Fork John Day River. Electivity analysis and logistic regression were used to test for associations between the longitudinal distribution of salmon and cool-water areas and stream habitat characteristics. Chinook salmon were distributed nonuniformly in reaches throughout each stream. Salmon distribution and cool water temperature patterns were most strongly related at reach-level spatial scales in the warm stream, the Middle Fork (maximum likelihood ratio: P < 0.01), and most weakly related in the cold stream, the North Fork ( P > 0.30). Pools were preferred by adult chinook salmon in both subbasins (Bonferroni confidence interval: P ≤ 0.05); however, riffles were used proportionately more frequently in the North Fork than in the Middle Fork. Our observations of thermal refugia and their use by chinook salmon at multiple spatial scales reveal that, although heterogeneity in the longitudinal stream temperature profile may be viewed as an ecological warning sign, thermal patchiness in streams also should be recognized for its biological potential to provide habitat for species existing at the margin of their environmental tolerances.

Oregon↗

USGS1994

Variation in mitochondrial DNA and allozymes discriminates early and late forms of Chinook salmon Oncorhynchus tshawytscha in the Kenai and Kasilof Rivers, AK

Genetic differences between early and late forms of Alaskan chinook salmon ( Oncorhynchus tshawytscha ) were identified using two genetic approaches: mitochondrial DNA (mtDNA) analysis, and protein electrophoresis. Study populations consisted of early and late runs in each of the Kenai and Kasilof rivers in Alaska, and a population from the Minam River, Oregon. Two segments of mtDNA were amplified using the polymerase chain reaction (PCR) and digested with 14–16 restriction enzymes. Results showed that early runs were genetically similar to each other but different from the late runs. The late runs were different from each other based on the frequency of the common haplotypes. Frequency differences in shared haplotypes together with the presence of a unique haplotype separated the Minam River stock from those in Alaska. In the protein analysis, each population was examined at 30 allozyme loci. Based on 14 polymorphic loci, Minam River salmon were genetically distinct from the Alaskan populations. Within the Alaskan populations, early runs were most similar to each other but different from the late runs; the late runs were also genetically most similar to each other. Both mtDNA and allozyme analysis suggest that chinook salmon may segregate into genetically different early and late forms within a drainage.

Alaska↗

USGS1983

Habitat Suitability Index Models: Littleneck clam

The littleneck clam, a member of the family Veneridae, is a hardshell species found in estuaries, bays, sloughs, and open coastl ines along the Pacific coast. This clam primarily inhabits the intertidal zone, but also occurs in subtidal areas (Hancock et ale 1979). It ranges from the Aleutian Islands to Socorro Island, r,1exico (Fraser and Smith 1928; Fitch 1953). It is commercially important only in Br{tish Columbia and Washington, where it is a highly regarded table item (Goodwin 1971).

FWS/OBS↗