Geology topics

Eric A. Johnson

Publications and source records attributed to Eric A. Johnson.

4 recordsLinked to original sources

USGS2022

Occurrence of a reproducing wild population of Channa aurolineata (Pisces: Channidae) in the Manatee River drainage, Florida

We report on the discovery of a wild, reproducing population of Channa aurolineata (Pisces: Channidae) in west-central Florida (USA), and first documented occurrence of snakeheads in the Gulf Coast region. Channa aurolineata is a large, predatory fish of the bullseye snakehead “Marulius group” species complex from Asia. Adult and juvenile specimens were captured in June 2020 in a 1.8-hectare pond that connects during high water to a small stream within the Manatee River-Tampa Bay Basin. The pond site is 250-km from the only other wild C. aurolineata population in the USA (present in southeast Florida since ca. 2000) and is considered a separate introduction and not the result of natural dispersal. Morphological and molecular comparisons revealed high overlap between the two Florida populations, evidence humans may have transported fish between sites. To verify identification, we compared Florida samples to C. aurolineata from Thailand and found mtDNA-COI barcode sequences to be identical or to differ by only a single base pair. Life body coloration of Florida samples matched their Asian counterparts, but Florida specimens averaged fewer dorsal fin rays (53.6 vs. 56.0), anal fin rays (34.2 vs 36.1), lateral line scales (65.3 vs. 67.4), and vertebrae (62.1 vs. 64.3), differences implying possible founder effect or sampling bias. Existence of this invasive predator is a concern because of the risk of spread and negative ecological effects, including an observation of terrestrial hunting behavior. In 2020–2021, several hundred C. aurolineata were removed from the pond by nets and electrofishing, and surveys suggested the population had not spread to nearby waters. In May 2021 the pond was treated with rotenone and 48 more specimens were recovered. No additional snakeheads have been sighted since the piscicide operation, although verification of eradication will require monitoring of the watershed.

Florida↗

USGS2015

Prevalence of toxin-producing Clostridium botulinum associated with the macroalga Cladophora in three Great Lakes: Growth and management

The reemergence of avian botulism caused by Clostridium botulinum type E has been observed across the Great Lakes in recent years. Evidence suggests an association between the nuisance algae, Cladophora spp., and C. botulinum in nearshore areas of the Great Lakes. However, the nature of the association between Cladophora and C. botulinum is not fully understood due, in part, to the complex food web interactions in this disease etiology. In this study, we extensively evaluated their association by quantitatively examining population size and serotypes of C. botulinum in algal mats collected from wide geographic areas in lakes Michigan, Ontario, and Erie in 2011–2012 and comparing them with frequencies in other matrices such as sand and water. A high prevalence (96%) of C. botulinum type E was observed in Cladophora mats collected from shorelines of the Great Lakes in 2012. Among the algae samples containing detectable C. botulinum , the population size of C. Botulinum type E was 10 0 –10 4 MPN/g dried algae, which was much greater (up to 10 3 fold) than that found in sand or the water column, indicating that Cladophora mats are sources of this pathogen. Mouse toxinantitoxin bioassays confirmed that the putative C. botulinum belonged to the type E serotype. Steam treatment was effective in reducing or eliminating C. botulinum type E viable cells in Cladophora mats, thereby breaking the potential transmission route of toxin up to the food chain. Consequently, our data suggest that steam treatment incorporated with a beach cleaning machine may be an effective treatment of Cladophora -borne C. botulinum and may reduce bird mortality and human health risks.

Lake Erie, Lake Michigan, Lake Ontario↗

USGS2013

Association of toxin-producing Clostridium botulinum with the macroalga Cladophora in the Great Lakes

Avian botulism, a paralytic disease of birds, often occurs on a yearly cycle and is increasingly becoming more common in the Great Lakes. Outbreaks are caused by bird ingestion of neurotoxins produced by Clostridium botulinum, a spore-forming, gram-positive, anaerobe. The nuisance, macrophytic, green alga Cladophora (Chlorophyta; mostly Cladophora glomerata L.) is a potential habitat for the growth of C. botulinum. A high incidence of botulism in shoreline birds at Sleeping Bear Dunes National Lakeshore (SLBE) in Lake Michigan coincides with increasingly massive accumulations of Cladophora in nearshore waters. In this study, free-floating algal mats were collected from SLBE and other shorelines of the Great Lakes between June and October 2011. The abundance of C. botulinum in algal mats was quantified and the type of botulism neurotoxin (bont) genes associated with this organism were determined by using most-probable-number PCR (MPN-PCR) and five distinct bont gene-specific primers (A, B, C, E, and F). The MPN-PCR results showed that 16 of 22 (73%) algal mats from the SLBE and 23 of 31(74%) algal mats from other shorelines of the Great Lakes contained the bont type E (bont/E) gene. C. botulinum was present up to 15 000 MPN per gram dried algae based on gene copies of bont/E. In addition, genes for bont/A and bont/B, which are commonly associated with human diseases, were detected in a few algal samples. Moreover, C. botulinum was present as vegetative cells rather than as dormant spores in Cladophora mats. Mouse toxin assays done using supernatants from enrichment of Cladophora containing high densities of C. botulinum (>1000 MPN/g dried algae) showed that Cladophora-borne C. botulinum were toxin-producing species (BoNT/E). Our results indicate that Cladophora provides a habitat for C. botulinum, warranting additional studies to better understand the relationship between this bacterium and the alga, and how this interaction potentially contributes to botulism outbreaks in birds.

Great Lakes↗

USGS2013

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

Rapid and inexpensive methods for genomewide single nucleotide polymorphism (SNP) discovery and genotyping are urgently needed for population management and conservation. In hybridized populations, genomic techniques that can identify and genotype thousands of species-diagnostic markers would allow precise estimates of population- and individual-level admixture as well as identification of 'super invasive' alleles, which show elevated rates of introgression above the genomewide background (likely due to natural selection). Techniques like restriction-site-associated DNA (RAD) sequencing can discover and genotype large numbers of SNPs, but they have been limited by the length of continuous sequence data they produce with Illumina short-read sequencing. We present a novel approach, overlapping paired-end RAD sequencing, to generate RAD contigs of >300–400 bp. These contigs provide sufficient flanking sequence for design of high-throughput SNP genotyping arrays and strict filtering to identify duplicate paralogous loci. We applied this approach in five populations of native westslope cutthroat trout that previously showed varying (low) levels of admixture from introduced rainbow trout (RBT). We produced 77 141 RAD contigs and used these data to filter and genotype 3180 previously identified species-diagnostic SNP loci. Our population-level and individual-level estimates of admixture were generally consistent with previous microsatellite-based estimates from the same individuals. However, we observed slightly lower admixture estimates from genomewide markers, which might result from natural selection against certain genome regions, different genomic locations for microsatellites vs. RAD-derived SNPs and/or sampling error from the small number of microsatellite loci (n = 7). We also identified candidate adaptive super invasive alleles from RBT that had excessively high admixture proportions in hybridized cutthroat trout populations.

Molecular Ecology↗