USGS ScienceSearch

Geology topics

Eben H. Paxton

Publications and source records attributed to Eben H. Paxton.

At least 19 recordsLinked to original sources

Variation in pathogen load and the pathogen load–infectiousness relationship broaden avian malaria’s distribution

Two aspects of host infectiousness shape pathogen transmission and distribution but are underappreciated: the relationship between pathogen load and infectiousness, and variability in pathogen load within species. We quantified the relationship between host pathogen load (parasitemia) for avian malaria ( Plasmodium relictum ) and infectiousness for biting Culex quinquefasciatus mosquitoes with experimental infections in canaries ( Serinus canaria ). Using this relationship, we estimated the infectiousness of 17 bird species in 11 communities in Hawaiʻi and quantified the relative contributions of infection stage (acute versus chronic) to transmission. We show that infectiousness to mosquitoes increased with parasitemia, temperature, and time since feeding. The relationship’s gradual (low) parasitemia slope resulted in a wide range of parasitemias being partly infectious, and high within-host species variability in parasitemia led to extensive overlap in infectiousness among hosts. Disproportionate mosquito host utilization (inferred from relative infection prevalence) elevated the importance of a few host species, yet broad overlap in species infectiousness resulted in similar total infectiousness across most bird communities. This similarity likely contributed to avian malaria’s widespread distribution throughout Hawaiʻi despite diverse host community assemblages. Our findings highlight the importance of both the shape of the pathogen load–infectiousness relationship and within-species variability in determining a pathogen’s host range, transmission intensity, and spatial spread.

Nature Communications

Getting ahead of the crises: Developing an avian malaria disease management plan for Hawaiian forest birds

Avian malaria is an existential threat to a majority of native Hawaiian forest birds. Climate change is facilitating the spread of malaria to historically disease-free areas, and despite the risk of native Hawaiian forest bird extinctions from malaria outbreaks, no comprehensive disease management plans exist for forest bird conservation areas. Hakalau Forest National Wildlife Refuge, Hawai‘i, supports a thriving bird community in a historically disease-free area that is now vulnerable to malaria incursion. Drawing on the expertise of land managers and research scientists, we developed an approach that could be used to proactively address the risk of expanding malaria into the Refuge. The plan lays out a multi-level approach that includes options for monitoring and management actions depending on defined threat levels: Vigilant, High Alert, Disease Outbreak, and Crisis levels. Initial Vigilant and High Alert levels monitor bird populations, climate conditions, and mosquito occurrence for signs of possible disease outbreaks, with higher levels shifting toward more direct management responses. While specific actions will change as new tools become available, the proactive approach can help Refuge managers better respond to changing malaria levels in the future and provide a model for managing disease here in Hawai‘i and elsewhere.

Hawaii

Variation in gene expression across infection status and elevation in a Hawaiian honeycreeper

Introduced pathogens exert novel selection on hosts, and although many host species have experienced drastic population declines in the absence of adaptation, some hosts have adapted to highly virulent pathogens. For instance, mosquitoes and Plasmodium relictum introduced to the Hawaiian Islands have resulted in extinctions and catastrophic population declines due to avian malaria, particularly in the diverse clade of Hawaiian honeycreepers. However, some species, such as the Hawai'i 'amakihi ( Chlorodrepanis virens ), can survive infection. Immunity exists in low-elevation populations where mosquitoes are abundant, whereas high-elevation, unexposed populations of 'amakihi display greatly reduced immunity. To explore the basis of adaptation to P. relictum in low-elevation 'amakihi, we sequenced transcriptomes from 24 low-elevation and 15 high-elevation 'amakihi. We tested for differential gene expression between (i) infected and uninfected birds and (ii) low- and high-elevation birds. Infected birds showed significant differences in expression across many transcripts with diverse cellular functions involved in different pathways of immune response; eight of the top 13 transcripts blasted to genes previously implicated in immunity to malaria in 'amakihi, and 11 have been identified in other infectious disease systems. Thirteen transcripts showed a trend of higher expression in high-elevation birds. These transcripts blasted to genes involved in metabolism, blood coagulation, and immune response. Our results provide increasing support for a subset of genes involved in immunity to malaria in 'amakihi and hint at possible antagonistic interactions between response to pathogens and environmental characteristics associated with elevation. Further work clarifying the nature of these interactions could benefit conservation efforts of Hawaiian honeycreepers in upper elevation refugia that are increasingly subject to malaria exposure.

Hawaii

Alternating movement strategies of a tropical raptor

The majority of raptor species reside in the tropics, yet very little is known about their movement ecology. However, quantifying movement behavior can provide otherwise elusive information on resource needs, habitat selection, and ecological constraints, which is important for understanding ecological patterns and the management of species of conservation concern. On the Island of Hawai‘i, Hawai‘i, USA, the endemic ‘Io, or Hawaiian Hawk ( Buteo solitarius ), is a species of conservation concern that little is known of their movement ecology, yet they are dependent on a fragmented and rapidly changing environment. We tracked 15 individuals for up to 18 months across a diverse landscape on the eastern side of the island. We found that all ‘Io occupied a relatively small geographic area, their place of residency, where they spent all or most of their time. However, 10 individuals also exhibited an alternative movement pattern, where individuals repeatedly commuted back and forth between their place of residency to another, geographically disjunct location. These commuter periods, which could last from 24–180 days, were characterized by frequent (9–259) movements, with individual trips lasting 4–77 h away from their place of residency and 12–47 h in between commuter trips. In most cases, individuals went to the same non-contiguous commuting destination, even across multiple commuting sessions, indicating high fidelity to commuting locations. The ‘Io is a forest adapted Buteo but occurs across a diverse landscape from forest to agriculture lands to urban areas. Habitat selection analysis indicated high individual variation among different birds, but generally a preference for forest patches at localized levels. The discovery of the alternative commuting strategy for many ‘Io represents a cryptic movement pattern in the species, demonstrating the power of small, long-lived Global Position System tracking devices to track movement and providing important insights into the ecology of a tropical island raptor.

Hawaii

Innovative microphone transmitter reveals differences in acoustic structure between broadcast and whisper songs of Myadestes obscurus (ʻŌmaʻo)

Low-amplitude “whisper songs” are a taxonomically broad phenomenon in birds that could play an important role in the suite of behaviors birds use to communicate. Due to its cryptic nature, there are inherent difficulties in capturing high-quality whisper song recordings without interrupting natural behaviors. Thus, the whisper song acoustic structure is poorly understood and its potential function remains the subject of debate. Here, we present one of the first quantitative assessments of the acoustic structure of whisper song in birds. Using an innovative microphone transmitter, we collected high-quality recordings of broadcast and whisper songs from the Myadestes obscurus (ʻŌmaʻo), a thrush species endemic to the Island of Hawai’i. The transmitter was attached to the birds and broadcasted radio signals of all vocalizations produced by the individual to distances over 100 m away that minimized disruption of the birds’ normal behavior while recording. We demonstrate that M. obscurus whisper songs are a distinct class of vocalization that differs from broadcast songs in acoustic characteristics beyond amplitude, such as song length, frequency, and length of silent intervals between notes. These findings, in conjunction with habitat-associated variation in the rate at which M. obscurus emit these vocalization classes, indicate broadcast and whisper songs likely serve separate functions. This work provides evidence supporting the acoustic adaptation hypothesis that posits that densely vegetated habitats promote the evolution of songs with specific acoustic features that maintain signal integrity as the sound propagates through the environment.

Hawaii

Population genomics of recovery and extinction in Hawaiian honeycreepers

Native Hawaiian forest birds are experiencing an unprecedented extinction crisis. In particular, the iconic Hawaiian honeycreeper radiation has declined to just 17 out of ∼60 species remaining, most threatened with extinction due to avian malaria. Here, we investigate the genomic signatures of these declines in three honeycreeper species: the critically endangered ʻakikiki ( Oreomystis bairdi ) and ʻakekeʻe ( Loxops caeruleirostris ) and the extinct poʻouli ( Melamprosops phaeosoma ). Surprisingly, we find that Hawaiian honeycreepers, even the last known po‘ouli individual, maintain high heterozygosity compared with other island birds, reflecting historically large population sizes. This high heterozygosity may contribute to an elevated impact of inbreeding depression, as evidenced by reduced survival and reproductive success among highly inbred ‘akikiki. Demographic analysis revealed that recent precipitous declines in ‘akikiki and ‘akekeʻe coincide with the spread of avian malaria in the late 20 th century, consistent with malaria being the primary driver of population collapse. Using predictive population viability modeling, we explore potential recovery scenarios for ʻakekeʻe, which has recently declined below 100 individuals in the wild. Our models predict that, under current conditions, ‘akekeʻe is likely to go extinct in the near future. However, if mosquito control campaigns are effective at reducing malaria, recovery can still occur. These findings emphasize the urgency of ongoing mosquito control efforts, demonstrating hope for a species nearing the brink of extinction. More broadly, our study provides a detailed examination of genomic diversity, inbreeding depression, and extinction risk in a collapsing adaptive radiation, with implications for conservation of other endangered island species.

Hawaii

Improving efficiency of disease vector sampling in the field: An automatic solar-powered mosquito trapping system

Trapping mosquitoes to quantify their distribution and abundance is often a key step in monitoring dynamics of vector-borne diseases. This is the case in Hawaii, where avian malaria is devastating native forest birds that are highly susceptible to non-native diseases. However, mosquito trapping is difficult and labor intensive. A typical operation requires traps to be visited multiple times within a 24-hour period to control their active components and batteries. For example, traps for nocturnal mosquitoes require trap fans and carbon dioxide (CO2) tanks turned on in the evening and then turned off the following morning, with batteries changed frequently. For traps in very remote locations, this frequent attendance accrues considerable cost and personnel time. To help minimize field efforts required for maintaining mosquito trapping arrays, we developed an automated power system to operate the mosquito traps. The traps can be set to operate on a schedule using a built-in timer, eliminating the need for personnel to manually turn traps on and off. Additionally, this system is powered by a solar-recharged battery so that the system can run indefinitely in many field locations. We tested the system at ‘Āinahou Ranch in Hawai‘i Volcanoes National Park, Island of Hawai‘i, where we operated a trapping array continuously for over two years. Specifically, two types of traps were deployed at each location, one a gravid trap and another a CO2 trap. We provide a step-by-step guide on how to build the systems and describe how to deploy them in the field.

Hawaii Cooperative Studies Unit Technical Report

The role of geography, diet, and host phylogeny on the gut microbiome in the Hawaiian honeycreeper radiation

The animal gut microbiome can have a strong influence on the health, fitness, and behavior of its hosts. The composition of the gut microbial community can be influenced by factors such as diet, environment, and evolutionary history (phylosymbiosis). However, the relative influence of these factors is unknown in most bird species. Furthermore, phylosymbiosis studies have largely focused on clades that diverged tens of millions of years ago, and little is known about the degree of gut microbiome divergence in more recent species radiations. This study explores the drivers of microbiome variation across the unique and recent Hawaiian honeycreeper radiation (Fringillidae: Drepanidinae). Fecal samples were collected from 14 extant species spanning the main islands of the Hawaiian archipelago and were sequenced using three metabarcoding markers to characterize the gut microbiome, invertebrate diet, and plant diet of Hawaiian honeycreepers. We then used these metabarcoding data and the honeycreeper host phylogeny to evaluate their relative roles in shaping the gut microbiome. Microbiome variation across birds was highly individualized; however, source island had a small but significant effect on microbiome structure. The microbiomes did not recapitulate the host phylogenetic tree, indicating that evolutionary history does not strongly influence microbiome structure in the honeycreeper clade. These results expand our understanding of the roles of diet, geography, and phylogeny on avian microbiome structure, while also providing important ecological information about the diet and gut microbiota of wild Hawaiian honeycreepers.

Hawaii

Gape-limited invasive predator frequently kills avian prey that are too large to swallow

Gape-limited predators (e.g., snakes, many fish) are not generally expected to pose a predation threat to prey that are too large for them to swallow. However, the extent to which snakes predate on prey that exceed their gape limitation remains largely unknown. We conducted the first study to investigate the influence of both prey and predator sizes on the frequency of ingestion success by snakes in a natural system. We combined survival monitoring of an avian prey species ( Aplonis opaca ) via radio-telemetry with a survey of the size distribution of their major predator ( Boiga irregularis ) on Guam. This allowed us to assess (1) the frequency of unsuccessful ingestion by the predator, (2) whether the size of the prey predicts ingestion success, (3) whether the size of the predator predicts ingestion success, and (4) the relationship between prey and predator sizes in successful ingestion attempts. We found that nearly half (47.95%) of ingestion attempts by snakes on fledgling birds were unsuccessful, and no instances where unsuccessful ingestion caused the mortality of the snake. Attempts to consume smaller fledglings were as likely to be unsuccessful as attempts to swallow larger fledglings. However, snakes that successfully ingested fledglings were among the largest snakes in the population, and larger than average conspecifics attracted to endothermic prey. The smallest snakes that successfully ingested fledglings attained remarkably high relative prey mass values for their species, consuming prey weighing up to 79.9% of their own mass. Our study indicates that B. irregularis routinely predate prey that are too large for them to successfully ingest, which causes mortality to the prey but poses little risk to the predator. The potential reward for snakes in consuming oversized prey may outweigh the inherent risks, while instances of predation that do not result in consumption may have considerable impacts on prey populations.

Guam

A review of the ecology and conservation biology of Sali (Micronesian Starling, Aplonis opaca guami) on Guam

The accidental introduction of the Brown Treesnake (BTS, Boiga irregularis ) to Guam following World War II led to the extinction, extirpation, or severe decline of most of Guam’s native avifauna. One forest bird species that managed to persist is the cavity-nesting Såli (Micronesian Starling, Aplonis opaca guami ), a once-ubiquitous native omnivore whose current Guam distribution is restricted primarily to urbanized areas in the northern half of the island, with a second much smaller population on Cocos Island off southern Guam. Såli on Guam breed year-round and are habitat generalists with large home ranges. Besides arthropods and small vertebrates, they consume fruit from a wide range of native and introduced plant species and are key seed dispersers within the local ecosystem. Såli on Guam suffer extremely high post-fledging mortality due to predation by BTS and cats, leading to a population age structure strongly skewed towards adult birds. Other threats include habitat loss and degradation, extreme weather events, and sea level rise. Key management activities aimed at restoring this species include predator control, while non-native ungulate removal and vegetation management may be undertaken to support broader ecological recovery. This species account on Såli provides a review of the literature on this species, synthesizing information on habitat use, life history, and demographics to provide a biological foundation for future recovery efforts.

Micronesica

Videographic monitoring at caves to estimate population size of the endangered yǻyaguak (Mariana swiftlet) on Guam

The yǻyaguak (Mariana swiftlet; Aerodramus bartschi ) is an endangered cave-nesting species historically found on Guam and the southern Mariana Islands, Micronesia. The population on Guam has been severely affected by the introduction of the brown treesnake Boiga irregularis . Population status assessments have, however, been challenging due to the limitations of traditional counting methods, which rely on visual observations at cave entrances and are prone to inaccuracies. To improve count accuracy, we estimated yǻyaguak population size and relative nesting activity using thermal and near-infrared videography. The population on Guam was surveyed at the island’s 3 known occupied caves (Mahlac, Maemong, and Fachi) between 2019 and 2023. Mahlac Cave harbored the largest colony, which ranged from 506 to 665 birds; Maemong Cave held 144 to 196 birds; and Fachi Cave, which is sometimes flooded, had 28 (in 2019) and 35 birds (in 2023). Our estimates indicate a slight decline in the yǻyaguak population over the study period. This study demonstrates the potential of thermal and near-infrared videography for improved monitoring of yǻyaguak colonies and nesting activity, which will contribute to our understanding of population dynamics and the effectiveness of management strategies such as brown treesnake control.

Guam

Identifying conservation introduction sites for endangered birds through the integration of lidar-based habitat suitability models and population viability analyses

Similar to other single-island endemic Hawaiian honeycreepers, the critically endangered ‘ākohekohe ( Palmeria dolei ) is threatened by climate-driven disease spread. To avert the imminent risk of extinction, managers are considering novel measures, including the conservation introduction (CI) of ‘ākohekohe from Maui to higher elevation habitats on the Island of Hawai’i. This study integrated lidar-based habitat suitability models (LHSMs) and population viability analyses (PVAs) to assess five candidate sites currently considered by managers for CI. We first developed an LHSM for the species’ native range on Maui. We then projected habitat suitability across candidate CI sites, using forest structure and topography metrics standardized across sensor types. Given the structural variability observed within the five candidate sites, we identified clusters of contiguous, highly suitable habitat as potential release sites. We then determined how many adult individuals could be supported by each cluster based on adult home range estimates. To determine which clusters could house the minimum number of ‘ākohekohe birds necessary for a stable or increasing future population, we conducted PVAs under multiple scenarios of bird releases. We found that canopy height and relative height 90 had the greatest effects on model performance, possibly reflecting ‘ākohekohe’s preference for taller canopies. We found that a small release of at least nine pairs of equal sex ratios were sufficient for an 80% chance of success and a <1% chance of extirpation in 20 years, resulting in a minimum release area of 4.5 ha in size. We integrated the results of the LHSM and PVA into an interactive web application that allowed managers to consider the caveats and uncertainties associated with both LHSMs and PVAs in their decision-making process. As climate change continues to threaten species worldwide, this research demonstrates the value of lidar remote sensing combined with species-specific models to enable rapid, quantitative assessments that can inform the increasing consideration of time-sensitive conservation introductions.

Hawaii

Linking avian malaria parasitemia estimates from quantitative PCR and microscopy reveals new infection patterns in Hawai'i

Plasmodium parasites infect thousands of species and provide an exceptional system for studying host-pathogen dynamics, especially for multi-host pathogens. However, understanding these interactions requires an accurate assay of infection. Assessing Plasmodium infections using microscopy on blood smears often misses infections with low parasitemias (the fractions of cells infected), and biases in malaria prevalence estimates will differ among hosts that differ in mean parasitemias. We examined Plasmodium relictum infection and parasitemia using both microscopy of blood smears and quantitative polymerase chain reaction (qPCR) on 299 samples from multiple bird species in Hawai'i and fit models to predict parasitemias from qPCR cycle threshold (Ct) values. We used these models to quantify the extent to which microscopy underestimated infection prevalence and to more accurately estimate infection patterns for each species for a large historical study done by microscopy. We found that most qPCR-positive wild-caught birds in Hawaii had low parasitemias (Ct scores ≥35), which were rarely detected by microscopy. The fraction of infections missed by microscopy differed substantially among eight species due to differences in species’ parasitemia levels. Infection prevalence was likely 4–5-fold higher than previous microscopy estimates for three introduced species, including Zosterops japonicus , Hawaii’s most abundant forest bird, which had low average parasitemias. In contrast, prevalence was likely only 1.5–2.3-fold higher than previous estimates for Himatione sanguinea and Chlorodrepanis virens , two native species with high average parasitemias. Our results indicate that relative patterns of infection among species differ substantially from those observed in previous microscopy studies, and that differences depend on variation in parasitemias among species. Although microscopy of blood smears is useful for estimating the frequency of different Plasmodium stages and host attributes, more sensitive quantitative methods, including qPCR, are needed to accurately estimate and compare infection prevalence among host species.

Hawai'i

Post-Typhoon Mawar population counts of the endangered yǻyaguak (Mariana swiftlet) on Guam

The yǻyaguak (Mariana swiftlet, Aerodramus bartschi) is an endangered cave-roosting species native to Guam and southern Mariana Islands, Micronesia. The population on Guam has declined substantially over the last half century, likely due to the introduction of the brown treesnake (Boiga irregularis), but other factors have been proposed including habitat loss, pesticides, reduced food resources, and powerful storms. On May 24–25, 2023, Guam was hit by the category-4 Typhoon Mawar, which brought wide-spread destruction to the island. Approximately 6 weeks prior to the typhoon in April 2023, we conducted surveys of the three known colonies of yǻyaguak at Mahlac, Maemong, and Fachi caves. This survey provided a baseline population estimate prior to Typhoon Mawar’s landfall. In July 2023, we resurveyed the caves to estimate colony size and assess whether the cave colonies experienced significant declines in the immediate aftermath of the storm. In November 2023, we conducted our regularly scheduled biannual surveys which provided a longer-term assessment of potential impacts from the typhoon. Our counts indicated that in the immediate aftermath (~6 weeks) there was a 7–8% reduction in size of colonies compared to the April 2023 counts, but in November there were larger, 19–35% reductions in the cave colonies from pre-Mawar surveys. These results suggest that the long-term effects of the storm were more detrimental to the yǻyaguak populations than the immediate impacts if these colony size reductions are a result of the storm. Continued monitoring of the yǻyaguak cave colonies will allow for documenting the pace of recovery from the storm.

Guam

Distribution and trends of endemic Hawaiian waterbirds, 1986–2023

This study updates the status assessment of four endemic endangered Hawaiian waterbird species—ae‘o (Hawaiian stilt, Himantopus mexicanus knudseni), ‘alae ke‘oke‘o (Hawaiian coot, Fulica alai), ‘alae ‘ula (Hawaiian gallinule, Gallinula galeata sandvicensis), and koloa maoli (Hawaiian duck, Anas wyvilliana)—from 1986 to 2016 by incorporating new data from 2017–2023. State-space models, which account for biological and sampling variation, were fitted to estimate population sizes and trends from both core and non-core wetland survey sites. Long-term trends (1986–2023) largely show increasing populations for all four species, but recent short-term trajectories (2013–2023) are to a greater degree than previous analyses, predominantly negative, indicating accentuated declines in some island populations. Summer counts have declined relative to winter counts over the 38-year period, indicating potential changes in habitat availability and breeding patterns due to shifting rainfall patterns. Although negative trends were apparent in some non-core wetlands, our study underscores the importance of both core and non-core wetlands for waterbird populations.

Hawaii

Landscape configuration alters movement behavior and space-use of a Hawaiian forest bird community

Habitat loss and fragmentation are considered the greatest threats to ecosystems worldwide. Movement reveals how individuals meet their habitat requirements and respond to environmental heterogeneity, and thus can provide a powerful tool for investigating how animals respond to changes in landscape configuration. In our study, we examined the effects of landscape configuration on the space use and movement strategies of four endemic Hawaiian forest bird species spanning a range of foraging guilds (i.e. frugivore, nectivore, generalist). We used a landscape-level automated radio tracking system to measure location data of 127 individuals tracked on Hawaiʻi Island in a naturally fragmented landscape created by volcanic activity in the mid- to late-1800s and a nearby continuous landscape. We found that landscape configuration had a strong effect on movement patterns and space-use of all four species. In the fragmented landscape, all species predominately occupied a single forest patch, displayed a high degree of area-restricted search behavior, with few long-distance movements away from their primary forest patch. These patterns contrasted significantly with those of conspecifics in the continuous landscape which exhibited relatively unconstrained movements across the forested landscape and had 3- to 12-fold larger home ranges. Our findings indicate that landscape structure plays a strong role in shaping movement behavior of a tropical bird community and provides valuable insights into the behavioral mechanisms that may be important for species to persist within fragmented landscapes.

Journal of Avian Biology

Historical DNA reveals climate adaptation in an endangered songbird

To cope with climate change, species may shift their distributions or adapt in situ to changing environmental conditions. However, clear examples of genetic changes via adaptation are limited. We explore evolutionary responses to climate change in the endangered southwestern willow flycatcher ( Empidonax traillii extimus ) through whole-genome comparisons between historical specimens, collected from 1888 to 1909 near San Diego, California, United States, and contemporary individuals from across the breeding range. Genomic analyses revealed that introgression into San Diego increased adaptive potential over time and shifted genome-wide population structure towards that of neighbouring populations. In contrast, loci linked to climate (dew point temperature and precipitation) shifted away from neighbouring populations and in a direction consistent with adaptation to climate change in southern California. This research highlights the role of admixture in facilitating adaptive shifts through its impact on genome-wide genetic variation and represents one of the few studies to document climate adaptation in a wild population.

Nature Climate Change

Suppression of invasive Brown Treesnakes and reintroduction of native avifauna on Guam

Many agencies and interest groups are committed to re-establishing components of Guam's native avifauna through the reintroduction of captive-reared birds or translocation from other islands in the Marianas if the Brown Treesnake ( Boiga irregularis ; BTS) can be eliminated. Island-wide eradication of BTS from Guam continues to appear out of reach, but with recent and future advancement in BTS suppression technology, we may soon reach a point where suppression may enable the reintroduction of some of Guam's extirpated bird species. Our simulations indicate that bird persistence in Guam's forests would only be possible at a suppression level just short of full eradication.

Bulletin of the Ecological Society of America