Geology topics

Douglas F. Markle

Publications and source records attributed to Douglas F. Markle.

7 recordsLinked to original sources

USGS2020

Odds ratios and hurdle models: a long-term analysis of parasite infection patterns in endangered young-of-the-year suckers from Upper Klamath Lake, Oregon, USA

We used odds ratios and a hurdle model to analyze parasite co-infections over 25 years on >20,000 young-of-the year of endangered Shortnose and Lost River Suckers. Host ecologies differed as did parasite infections. Shortnose Suckers were more likely to be caught inshore and 3–5 times more likely to have Bolbophorus spp. and Contracaecum sp. infections, and Lost River Suckers were more likely to be caught offshore and approximately three times more likely to have Lernaea cyprinacea infections. An observed peak shift seems likely to be due to a lower host size limit for Bolbophorus spp. (13.6 mm) compared with L. cyprinacea (23.4 mm). The large data set allowed us to generate strong hypotheses: (i) that a major marsh restoration project had unintended consequences that resulted in an increase in infections; (ii) that co-infection with Bolbophorus spp. increased the odds of infection by L. cyprinacea and Contracaecum sp.; (iii) that significant declines in the odds of infection over approximately 25 days were due to parasite-induced host mortality; (iv) that the fish’s small size relative to L. cyprinacea and Contracaecum sp. might be directly lethal; (v) that the absence of L. cyprinacea infections in the early 1990s was associated with good year-class production of the suckers; and (vi) that parasites might increase the odds of vagrancy from the nursery ground.

Oregon↗

USGS2014

Particle-tracking investigation of the retention of sucker larvae emerging from spawning grounds in Upper Klamath Lake, Oregon

This study had two objectives: (1) to use the results of an individual-based particle-tracking model of larval sucker dispersal through the Williamson River delta and Upper Klamath Lake, Oregon, to interpret field data collected throughout Upper Klamath and Agency Lakes, and (2) to use the model to investigate the retention of sucker larvae in the system as a function of Williamson River flow, wind, and lake elevation. This is a follow-up study to work reported in Wood and others (2014) in which the hydrodynamic model of Upper Klamath Lake was combined with an individual-based, particle-tracking model of larval fish entering the lake from spawning areas in the Williamson River. In the previous study, the performance of the model was evaluated through comparison with field data comprising larval sucker distribution collected in 2009 by The Nature Conservancy, Oregon State University (OSU), and the U.S. Geological Survey, primarily from the (at that time) recently reconnected Williamson River Delta and along the eastern shoreline of Upper Klamath Lake, surrounding the old river mouth. The previous study demonstrated that the validation of the model with field data was moderately successful and that the model was useful for describing the broad patterns of larval dispersal from the river, at least in the areas surrounding the river channel immediately downstream of the spawning areas and along the shoreline where larvae enter the lake. In this study, field data collected by OSU throughout the main body of Upper Klamath Lake, and not just around the Williamson River Delta, were compared to model simulation results. Because the field data were collected throughout the lake, it was necessary to include in the simulations larvae spawned at eastern shoreline springs that were not included in the earlier studies. A complicating factor was that the OSU collected data throughout the main body of the lake in 2011 and 2012, after the end of several years of larval drift collection in the Williamson River by the U.S. Geological Survey. Those larval drift data provided necessary boundary-condition information for the earlier studies, but there were no measured boundary conditions for larval input into model simulations during the years of this study (2011−12). Therefore, we developed a method to estimate a time series of larval drift in the Williamson River, and of the emergence of larvae from the gravel at the eastern shoreline springs, that captured the approximate timing of the larval pulse of the Lost River sucker (Deltistes luxatus) and shortnose sucker (Chasmistes brevirostris) and the relative magnitude of the pulses by species and spawning location. The method is not able to predict larval drift on any given day, but it can reasonably predict the approximate temporal progression of the larval drift through the season, based on counts of adult suckers returning to spawn. The accuracy in the timing of the larval pulses is not better than about plus or minus 5 days. Model results and field data were consistent in the basic progression of both catch per unit effort (CPUE) and larval length through time. The model simulation results also duplicated some of the characteristics of the spatial patterns of density in the field data, notably the tendency for high larval densities closer to the eastern and western shorelines. However, the model simulations could not explain high densities in the northern part of the lake or far into Ball Bay, locations that are far from the source of larvae in the Williamson River or eastern shoreline springs (as measured along the predominant transport pathways simulated in the model). This suggests the possibility of unaccounted-for spawning areas in the northern part of the lake and also that the period during which larvae are transported passively by the currents is shorter than the 46 days simulated in the model. Similarly, the progression of larval lengths in the field data is not a simple progression from smaller to larger fish away from sources in the river and springs, as simulated by the particle-tracking model; the smallest fish were caught at different times near the Williamson River, in the northwestern part of the lake, and in the southernmost part of the lake. This again suggests that fish may be spawning at places other than the river and eastern springs, that our understanding of larval transport is incomplete, or both. The model was used to run 96 numerical “experiments” in which lake elevation, river discharge, and wind forcing were varied systematically in order to investigate the sensitivity of particle retention to each variable, and with particular emphasis on the idea of managing lake elevation to control emigration. The estimates of particle retention cannot be equated directly to retention of fish larvae, primarily because there was no mortality included in the simulations, but the relative comparison of retention and emigration around the matrix of experimental conditions provided several “big picture” results: - Variables that cannot be controlled—winds and discharge—had the largest effect on retention. For example, at the lowest river discharge (20 cubic meters per second), simulated retention was high regardless of wind or lake elevation, whereas at the highest river discharge (100 cubic meters per second), retention was low regardless of wind or lake elevation. - When river discharge and wind were held constant, a higher elevation delayed the onset of the most rapid exit of particles by 1 (from the springs) to 4 (from the river) days, but did not determine overall retention. Only under the combination of conditions consisting of low discharge (50 cubic meters per second or less) and strong wind reversals for several days was there a consistent effect of lake elevation on overall retention several weeks into the simulation, and, under those conditions, retention was at the high end of the possible range regardless of lake elevation. - Under most combinations of conditions tested, after particles had been in the system for several days, the complex interaction between wind, elevation, and river discharge resulted in particle pathways, and therefore retention, being highly variable and unpredictable, at which point controlling lake elevation could not produce a predictable result. Therefore, on the basis of the model predictions, managing lake elevation probably is not a way to reliably provide any particular level of retention.

Oregon↗

USGS2014

Simulation and validation of larval sucker dispersal and retention through the restored Williamson River Delta and Upper Klamath Lake system, Oregon

A hydrodynamic model with particle tracking was used to create individual-based simulations to describe larval fish dispersal through the restored Williamson River Delta and into Upper Klamath Lake, Oregon. The model was verified by converting particle ages to larval lengths and comparing these lengths to lengths of larvae in net catches. Correlations of simulated lengths with field data were moderate and suggested a species-specific difference in model performance. Particle trajectories through the delta were affected by wind speed and direction, lake elevation, and shoreline configuration. Once particles entered the lake, transport was a function of current speed and whether behavior enhanced transport (swimming aligned with currents) or countered transport through greater dispersal (faster random swimming). We tested sensitivity to swim speed (higher speeds led to greater dispersal and more retention), shoreline configuration (restoration increased retention relative to pre-restoration conditions), and lake elevation (retention was maximized at an intermediate elevation). The simulations also highlight additional biological questions, such as the extent to which spatially heterogeneous mortality or fish behavior and environmental cues could interact with wind-driven currents and contribute to patterns of dispersal.

Oregon↗

USGS2012

Dispersal of larval suckers at the Williamson River Delta, Upper Klamath Lake, Oregon, 2006-09

An advection/diffusion modeling approach was used to simulate the transport of larval suckers from spawning areas in the Williamson River, through the newly restored Williamson River Delta, to Upper Klamath Lake. The density simulations spanned the years of phased restoration, from 2006/2007 prior to any levee breaching, to 2008 when the northern part of the delta was reconnected to the lake, and 2009 when levees on both sides of the delta had been breached. Model simulation results from all four years were compared to field data using rank correlation. Spearman ρ correlation coefficients were usually significant and in the range 0.30 to 0.60, providing moderately strong validation of the model. The correlation coefficients varied with fish size class in a way that suggested that the model best described the distribution of smaller fish near the Williamson River channel, and larger fish away from the channel. When Lost River and shortnose/Klamath largescale suckers were simulated independently, the correlation results suggested that the model better described the transport and dispersal of the latter species. The incorporation of night-time-only drift behavior in the Williamson River channel neither improved nor degraded correlations with field data. The model showed that advection by currents is an important factor in larval dispersal.

Oregon↗

USGS2009

Patterns of Larval Sucker Emigration from the Sprague and Lower Williamson Rivers of the Upper Klamath Basin, Oregon, Prior to the Removal of Chiloquin Dam - 2006 Annual Report

In 2006, we collected larval Lost River sucker Deltistes luxatus (LRS), shortnose sucker Chasmistes brevirostris (SNS), and Klamath largescale sucker Catostomus snyderi (KLS) emigrating from spawning areas in the Williamson and Sprague Rivers. This work is part of a multi-year effort to characterize the relative abundance, drift timing, and length frequencies of larval suckers in this watershed prior to the removal of Chiloquin Dam on the lower Sprague River. Additional larval drift samples were collected from the Fremont Bridge on Lakeshore Drive on the south end of Upper Klamath Lake near its outlet to the Link River. Because of difficulties in distinguishing KLS larvae from SNS larvae, individuals identified as either of these two species were grouped together and reported as KLS-SNS in this report. We found that larval densities varied by site with the highest densities being collected at the most upstream site on the Sprague River at river kilometer (rkm) 108.0 near Beatty, Oregon (Beatty), and the most downstream sites near Chiloquin, Oregon; one site on the Sprague River at rkm 0.7 (Chiloquin) and the other site on the Williamson River at rkm 7.4 (Williamson). Larval catches were relatively small and sporadic at two other sites on the Sprague River located between Chiloquin and Beatty (Power Station at rkm 9.5 and Lone Pine at rkm 52.7) and one site on the Sycan River at rkm 4.7. Most larvae (79 percent) collected in 2006 were identified as LRS. More larvae and eggs were collected at Chiloquin than at any other site. The seasonal timing of larval drift varied by location; larvae generally were captured earlier at upstream sites than at downstream sites. Cumulative catch percentages of drifting larvae suggest that larval LRS emigrated earlier than KLS-SNS larvae at every site. Drift of LRS larvae at Beatty began 3 to 4 weeks earlier than at Chiloquin or Williamson. At Chiloquin, peak larval catches occurred 3 and 5 weeks after peak egg catches. The daily peak in larval drift at Chiloquin occurred approximately 1.5 to 2.0 hours after sunset. Nightly peak larval drift varied by location; larvae were captured earlier in the evening at sites closer to known spawning locations than sites farther away from these areas. The highest numerical catches of sucker-sized eggs were at Chiloquin indicating that this site is in close proximity to a spawning area. Numerical catches of older, more developed larval and juvenile suckers also were highest at Chiloquin. This may be due to the turbulent nature of this site, which could have swept larger fish into the drift. Proportional catches of older, more developed larval and juvenile suckers were highest at Sycan, Lone Pine, Power Station, and Fremont Bridge. This indicates these sites are located nearer to sucker nursery areas rather than spawning areas. Very few larval LRS were collected at Fremont Bridge at the south end of Upper Klamath Lake. Larval KLS-SNS densities at Fremont Bridge were the third highest of the seven sampling sites. Peak drift of larval KLS-SNS at Fremont Bridge occurred the week after peak drift of larval KLS-SNS at Williamson. Although inter-annual variation continues to appear in the larval drift data, our results continue to show consistent patterns of larval emigration in the drainage basin. In combination with data collected from the spawning movements and destinations of radio-tagged and PIT-tagged adult suckers, this larval drift data will provide a baseline standard by which to determine the effects of dam removal on the spawning distribution of endangered Klamath Basin suckers in the Sprague River.

Open-File Report↗

USGS2005

Environmental stresses and skeletal deformities in fish from the Willamette River, Oregon

The Willamette River, one of 14 American Heritage Rivers, flows through the most densely populated and agriculturally productive region of Oregon. Previous biological monitoring of the Willamette River detected elevated frequencies of skeletal deformities in fish from certain areas of the lower (Newberg pool [NP], rivermile [RM] 26−55) and middle (Wheatland Ferry [WF], RM 72−74) river, relative to those in the upper river (Corvallis [CV], RM 125−138). The objective of this study was to determine the likely cause of these skeletal deformities. In 2002 and 2003, deformity loads in Willamette River fishes were 2−3 times greater at the NP and WF locations than at the CV location. There were some differences in water quality parameters between the NP and CV sites, but they did not readily explain the difference in deformity loads. Concentrations of bioavailable metals were below detection limits (0.6−1 μg/L). Concentrations of bioavailable polychlorinated biphenyls (PCBs) and chlorinated pesticides were generally below 0.25 ng/L. Concentrations of bioavailable polycyclic aromatic hydrocarbons were generally less than 5 ng/L. Concentrations of most persistent organic pollutants were below detection limits in ovary/oocyte tissue samples and sediments, and those that were detected were not significantly different among sites. Bioassay of Willamette River water extracts provided no evidence that unidentified compounds or the complex mixture of compounds present in the extracts could induce skeletal deformities in cyprinid fish. However, metacercariae of a digenean trematode were directly associated with a large percentage of deformities detected in two Willamette River fishes, and similar deformities were reproduced in laboratory fathead minnows exposed to cercariae extracted from Willamette River snails. Thus, the weight of evidence suggests that parasitic infection, not chemical contaminants, was the primary cause of skeletal deformities observed in Willamette River fish.

Oregon↗

USGS2005

Threats, conservation strategies, and prognosis for suckers (Catostomidae) in North America: insights from regional case studies of a diverse family of non-game fishes

Catostomid fishes are a diverse family of 76+ freshwater species that are distributed across North America in many different habitats. This group of fish is facing a variety of impacts and conservation issues that are somewhat unique relative to more economically valuable and heavily managed fish species. Here, we present a brief series of case studies to highlight the threats such as migration barriers, flow regulation, environmental contamination, habitat degradation, exploitation and impacts from introduced (non-native) species that are facing catostomids in different regions. Collectively, the case studies reveal that individual species usually are not threatened by a single, isolated factor. Instead, species in general face numerous stressors that threaten multiple stages of their life history. Several factors have retarded sucker conservation including widespread inabilities of field workers to distinguish some species, lack of basic natural history and ecological knowledge of life history, and the misconception that suckers are tolerant of degraded conditions and are of little social or ecological value. Without a specific constituent group lobbying for conservation of non-game fishes, all such species, including members of the catostomid family, will continue to face serious risks because of neglect, ignorance, and misunderstanding. We suggest that conservation strategies should incorporate research and education/outreach components. Other conservation strategies that would be effective for protecting suckers include freshwater protected areas for critical habitat, restoration of degraded habitat, and design of catostomid-friendly fish bypass facilities. We believe that the plight of the catostomids is representative of the threats facing many other non-game freshwater fishes with diverse life-history strategies globally.

Biological Conservation↗