Geology topics

Douglas A. Bell

Publications and source records attributed to Douglas A. Bell.

13 recordsLinked to original sources

USGS2023

Doing the same thing over and over again and getting the same result: Assessing variance in wetland invertebrate assemblages

Past efforts to explain variation of invertebrate assemblages in freshwater wetlands have been less productive than anticipated. To explore why efforts are disappointing, we assembled large invertebrate data sets from North Dakota prairie potholes, California rock pools, and Georgia Carolina bay wetlands that addressed spatial (among wetlands) and temporal (among seasons and years) variation. We anticipated that these large data-set sizes would enable robust conclusions to be drawn, and each place had unique environmental conditions that might contribute to greater explanatory power. We used statistical techniques that partitioned variation in invertebrate assemblages into spatial and/or temporal components, and that also yielded a measure of the amount of unexplained variation; Permutational Multivariate Analysis of Variation and Principal Coordinates Analysis assessed whole assemblage variation, and Analysis of Variance or Analysis of Covariance assessed variation in taxon richness, total abundances, and abundances of wide-spread individual taxa. Across all locations, variation explained by spatial and temporal factors, and unexplained variation were of comparable magnitudes (i.e., similar R 2 values of ~ 50%). Review of other published studies indicate that this pattern is widespread. The 50% or more unexplained variation is typically ignored by researchers, who instead focus on explained fractions. We argue that, besides addressing explained spatial and temporal variation in invertebrate assemblages (e.g., control by hydrology, resources, predation), efforts to understand what contributes to currently unexplained variation, that is unrelated to local spatial or temporal controls (e.g., broad climatic and biogeographic patterns, organism physiology and behavior), will lead to a fuller comprehension of how invertebrates in freshwater wetlands are controlled.

Wetlands↗

USGS2022

Interpreting long-distance movements of non-migratory golden eagles: Prospecting and nomadism?

Movements by animals can serve different functions and occur over a variety of spatial and temporal scales. Routine movement types, such as residency (localized movements) and migration, have been well studied. However, nonroutine movement types, such as dispersal, prospecting, and nomadism, are less well understood. Documenting these rarely detected events requires tracking large numbers of individuals across all age classes. We studied >500 golden eagles ( Aquila chrysaetos ) tracked by telemetry over a 10-year period in western North America, of which 160 engaged in nonroutine, long-distance (>300 km) movements. We identified spatial and temporal correlates of those movements at both small and large scales, and we quantified movement timing and direction. We further tested which age and sex classes of eagles were more likely to engage in these movements. Our analysis of 88,093 daily tracks suggested that distances traveled by eagles were responsive to the updraft potential of the spatial and temporal landscape they encountered. Tracks covered longer distances at locations and times of higher updraft potential, and older birds traveled farther than younger birds. By contrast, after decomposing daily tracks into 563 nonroutine, long-distance movements measured at a multiday scale, only the duration of travel was responsive to environmental conditions encountered by eagles. Multiday trips that were longer were those initiated in open and warm landscapes and those that ended in mountainous regions. Finally, long-distance movements were more frequently made in seasons other than winter, in north–south directions, and by young birds. We documented clear correlates of nonroutine, long-distance movements by golden eagles at small, local scales but found little evidence of such correlates at larger, regional scales. Most long-distance movements we documented fit patterns associated with traditional definitions of prospecting and nomadism but not migration. Our study is the first to describe these movement types by golden eagles, and as such provides a foundation for subsequent study into the movement ecology of other species.

Ecosphere↗

USGS2022

Age-specific survival rates, causes of death, and allowable take of golden eagles in the western United States

In the United States, the Bald and Golden Eagle Protection Act prohibits take of golden eagles ( Aquila chrysaetos ) unless authorized by permit, and stipulates that all permitted take must be sustainable. Golden eagles are unintentionally killed in conjunction with many lawful activities (e.g., electrocution on power poles, collision with wind turbines). Managers who issue permits for incidental take of golden eagles must determine allowable take levels and manage permitted take accordingly. To aid managers in making these decisions in the western United States, we used an integrated population model to obtain estimates of golden eagle vital rates and population size, and then used those estimates in a prescribed take level (PTL) model to estimate the allowable take level. Estimated mean annual survival rates for golden eagles ranged from 0.70 (95% credible interval = 0.66–0.74) for first-year birds to 0.90 (0.88–0.91) for adults. Models suggested a high proportion of adult female golden eagles attempted to breed and breeding pairs fledged a mean of 0.53 (0.39–0.72) young annually. Population size in the coterminous western United States has averaged ~31,800 individuals for several decades, with λ = 1.0 (0.96–1.05). The PTL model estimated a median allowable take limit of ~2227 (708–4182) individuals annually given a management objective of maintaining a stable population. We estimate that take averaged 2572 out of 4373 (59%) deaths annually, based on a representative sample of transmitter-tagged golden eagles. For the subset of golden eagles that were recovered and a cause of death determined, anthropogenic mortality accounted for an average of 74% of deaths after their first year; leading forms of take over all age classes were shooting (~670 per year), collisions (~611), electrocutions (~506), and poisoning (~427). Although observed take overlapped the credible interval of our allowable take estimate and the population overall has been stable, our findings indicate that additional take, unless mitigated for, may not be sustainable. Our analysis demonstrates the utility of the joint application of integrated population and prescribed take level models to management of incidental take of a protected species.

western United States↗

USGS2022

Golden Eagle (Aquila chysaetos)

The golden eagle ( Aquila chrysaetos ) is commonly recognized as an indicator of ecosystem health and was selected as an important indicator species for the ecological health of lands owned and managed by East Bay Stewardship Network (Network) partner agencies within the area of focus for this project (See map, Chapter 1). Based on national conservation goals and past and current golden eagle research in the area of focus, the desired condition and trend for this indicator species are to: (1) maintain or improve site occupancy by territorial pairs (i.e., the proportion of sites surveyed with at least 1 pair of eagles), (2) maximize reproductive rate (i.e., the proportion of sites surveyed with at least 1 pair of productive eagles), and (3) minimize the occurrence of territorial subadults in the local breeding population. The condition and trend in these three primary metrics were assessed for golden eagles in the area of focus using data from a large-scale demographic study conducted in 2014–2021 by the U.S. Geological Survey (USGS) and others. Overall, we found a condition of “caution” and an “unchanging” trend for golden eagles in the area of focus. Analyses of site occupancy and reproductive rate indicated that the local breeding population was unchanging (i.e., no evidence of increasing or decreasing time trends in these metrics during 2014–2021). However, a consistently high occurrence of territorial subadults (22%–35%) has been observed at breeding territories near the Altamont Pass Wind Resource Area (APWRA) relative to occupied territories monitored in surrounding regions (~3%). The heightened occurrence of territorial subadults suggested a possible increase in the adult mortality rate of territorial eagles occupying the Mt. Diablo Range and Mt. Hamilton subregions in the area of focus. Thus, although no trends were detected in site occupancy or reproductive rate, caution is warranted given the high observed frequency of territorial subadults, which was predominately associated with pairs monitored near the APWRA. The USGS golden eagle study was conducted during a period of prolonged and severe drought in the area of focus, which has been shown elsewhere to reduce the reproductive rate of golden eagles. Although we detected no trends in reproductive rate, we identified a condition of “caution” for this metric in the area of focus given that annual estimates were relatively low during the study period, which primarily included years of severe drought conditions in west-central California. A primary goal of the analysis was to provide a benchmark against which managers can measure future changes and understand the likely trajectory of this species. Baseline data and analyses provided here can be used to identify projects that could help support golden eagle conservation. Given the constraint of using only existing and available data, this evaluation also identified areas where not enough was known to draw meaningful conclusions. Gaps in our understanding include the long-term effects of repeated, extreme climate events (e.g., drought and wildfire) on golden eagle demographics and population sustainability, refined estimates of eagle survivorship and sources of mortality, and whether the APWRA represents a population sink for golden eagles within the northern Diablo Range and surrounding regions. These are described as data gaps at the end of this chapter and may be areas to focus on for future research and collaborations among land managers.

Book chapter↗

USGS2021

Does taxonomic and numerical resolution affect the assessment of invertebrate community structure in New World freshwater wetlands?

The efficiency of biodiversity assessments and biomonitoring studies is commonly challenged by limitations in taxonomic identification and quantification approaches. In this study, we assessed the effects of different taxonomic and numerical resolutions on a range of community structure metrics in invertebrate compositional data sets from six regions distributed across North and South America. We specifically assessed the degree of similarity in the metrics (richness, equitability, beta diversity, heterogeneity in community composition and congruence) for data sets identified to a coarse resolution (usually family level) and the finest taxonomic resolution practical (usually genus level, sometimes species or morphospecies) and by presence-absence and relative abundance numerical resolutions. Spearman correlations showed highly significant and positive associations between univariate metrics (richness and equitability) calculated for coarse- and finest-resolution datasets. Procrustes analysis detected significant congruence between composition datasets. Higher correlation coefficients were found for datasets with the same numerical resolutions regardless of the taxonomic level (about 90%), while the correlations for comparisons across numerical resolutions were consistently lower. Our findings indicate that family-level resolution can be used as a surrogate of finer taxonomic resolutions to calculate a range of biodiversity metrics commonly used to describe invertebrate community structure patterns in New World freshwater wetlands without significant loss of information. However, conclusions on biodiversity patterns derived from datasets with different numerical resolutions should be critically considered in studies on wetland invertebrates.

California, Chubut, Georgia, Maine, North Dakota, ↗

USGS2020

Distribution and abundance of Aquila chrysaetos (golden eagles) in East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan area, California

The East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan (HCP/NCCP) Preserve System was designed to protect and enhance ecological diversity and function in eastern Contra Costa County, California. Aquila chrysaetos (golden eagle) is a special-status species expected to benefit from biological goals of the HCP/NCCP. As part of a broader study, we estimated site-occupancy, abundance, and reproduction of golden eagles in the HCP/NCCP inventory area in 2019. We completed 99 surveys and recorded a total of 50 detections of territorial pairs of eagles at 20 (67 percent) of 30 sites (13.9-square-kilometer [km 2 ] plots). Detection probability of territorial pairs was highest in January and February (≥0.75) and lowest in mid-June to late July (<0.50). After correcting for imperfect detection, the expected probability of site-occupancy was 0.69 (standard error [SE] = 0.09), and mean expected abundance was 0.76 pairs per site (SE = 0.16), or 27.4 pairs per 500 km 2 . We found evidence of successful nesting (≥1 young fledged) for 3 (14 percent) of 22 pairs of eagles monitored in 2019. Our study design and baseline results should be useful for future monitoring and conservation of golden eagles in the HCP/NCCP area.

California↗

USGS2019

Elevated heterozygosity in adults relative to juveniles provides evidence of viability selection on eagles and falcons

Viability selection yields adult populations that are more genetically variable than those of juveniles, producing a positive correlation between heterozygosity and survival. Viability selection could be the result of decreased heterozygosity across many loci in inbred individuals and a subsequent decrease in survivorship resulting from the expression of the deleterious alleles. Alternatively, locus-specific differences in genetic variability between adults and juveniles may be driven by forms of balancing selection, including heterozygote advantage, frequency-dependent selection, or selection across temporal and spatial scales. We use a pooled-sequencing approach to compare genome-wide and locus-specific genetic variability between 74 golden eagle ( Aquila chrysaetos ), 62 imperial eagle ( Aquila heliaca ), and 69 prairie falcon ( Falco mexicanus ) juveniles and adults. Although genome-wide genetic variability is comparable between juvenile and adult golden eagles and prairie falcons, imperial eagle adults are significantly more heterozygous than juveniles. This evidence of viability selection may stem from a relatively smaller imperial eagle effective population size and potentially greater genetic load. We additionally identify ~2000 single-nucleotide polymorphisms across the 3 species with extreme differences in heterozygosity between juveniles and adults. Many of these markers are associated with genes implicated in immune function or olfaction. These loci represent potential targets for studies of how heterozygote advantage, frequency-dependent selection, and selection over spatial and temporal scales influence survivorship in avian species. Overall, our genome-wide data extend previous studies that used allozyme or microsatellite markers and indicate that viability selection may be a more common evolutionary phenomenon than often appreciated.

Journal of Heredity↗

USGS2019

Topographic drivers of flight altitude over large spatial and temporal scales

Bird movements vary spatially and temporally, but the primary drivers that explain such variation can be difficult to identify. For example, it is well known that the availability of updraft influences soaring flight and that topography interacts with weather to produce these updrafts. However, the influences of topography on flight are not well understood. We determined how topographic characteristics influenced flight altitude above ground level (AGL) of a large soaring bird, the Golden Eagle (Aquila chrysaetos), over several regions within the State of California, USA. Primary drivers of flight AGL, those to which eagles showed the same response at all spatial scales, were topographic roughness, ground elevation and the east-west component of aspect (eastness). Each of these is related to formation of thermal updrafts. Secondary drivers, those to which eagles showed region-specific patterns, included topographic position, percent slope, and the north-south component of aspect (northness). In contrast to primary drivers, these secondary drivers were related to formation of both thermal and orographic updrafts. Overall, drivers of flight altitudes that were related to thermal updrafts showed different levels of complexity due to spatial and temporal variation of those drivers than did flight altitudes related to orographic updrafts.

California↗

USGS2019

Non-anthropogenic diet-based oiling of predatory birds

Oiling of wildlife can have important consequences to individual animals and populations (Kingston 2002). Individual birds that are heavily oiled lose their ability to fly and may become ill or die from hypothermia, starvation, exhaustion, or drowning (Clark 1984, Rocke 1999). For example, large-scale oiling from the Exxon Valdez spill caused local declines in populations of many avian taxa (Irons et al. 2000). Although most oiling reports involve marine wildlife exposed to oil leaked from vessels or oil rigs, oiling also can occur in terrestrial environments, for example, via birds drinking water in puddles on asphalt roadways (Clark and Gorney 1987) or landing in oil field wastewater disposal facilities (Trail 2006, Ramírez 2010).

Journal of Raptor Research↗

USGS2018

New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Background Management requires a robust understanding of between- and within-species genetic variability, however such data are still lacking in many species. For example, although multiple population genetics studies of the peregrine falcon ( Falco peregrinus ) have been conducted, no similar studies have been done of the closely-related prairie falcon ( F. mexicanus ) and it is unclear how much genetic variation and population structure exists across the species’ range. Furthermore, the phylogenetic relationship of F. mexicanus relative to other falcon species is contested. We utilized a genomics approach (i.e., genome sequencing and assembly followed by single nucleotide polymorphism genotyping) to rapidly address these gaps in knowledge. Results We sequenced the genome of a single female prairie falcon and generated a 1.17 Gb (gigabases) draft genome assembly. We generated maximum likelihood phylogenetic trees using complete mitochondrial genomes as well as nuclear protein-coding genes. This process provided evidence that F. mexicanus is an outgroup to the clade that includes the peregrine falcon and members of the subgenus Hierofalco. We annotated > 16,000 genes and almost 600,000 high-quality single nucleotide polymorphisms (SNPs) in the nuclear genome, providing the raw material for a SNP assay design featuring > 140 gene-associated markers and a molecular-sexing marker. We subsequently genotyped ~ 100 individuals from California (including the San Francisco East Bay Area, Pinnacles National Park and the Mojave Desert) and Idaho (Snake River Birds of Prey National Conservation Area). We tested for population structure and found evidence that individuals sampled in California and Idaho represent a single panmictic population. Conclusions Our study illustrates how genomic resources can rapidly shed light on genetic variability in understudied species and resolve phylogenetic relationships. Furthermore, we found evidence of a single, randomly mating population of prairie falcons across our sampling locations. Prairie falcons are highly mobile and relatively rare long-distance dispersal events may promote gene flow throughout the range. As such, California’s prairie falcons might be managed as a single population, indicating that management actions undertaken to benefit the species at the local level have the potential to influence the species as a whole.

BMC Genomics↗

USGS2018

Spatial patterns in occupancy and reproduction of Golden Eagles during drought: Prospects for conservation in changing environments

We used a broad-scale sampling design to investigate spatial patterns in occupancy and breeding success of territorial pairs of Golden Eagles ( Aquila chrysaetos ) in the Diablo Range, California, USA, during a period of exceptional drought (2014–2016). We surveyed 138 randomly selected sample sites over 4 occasions each year and identified 199 pairs of eagles, 100 of which were detected in focal sample sites. We then used dynamic multistate modeling to identify relationships between site occupancy and reproduction of Golden Eagles relative to spatial variability in landscape composition and drought conditions. We observed little variability among years in site occupancy (3-yr mean = 0.74), but the estimated annual probability of successful reproduction was relatively low during the study period and declined from 0.39 (± 0.08 SE) to 0.18 (± 0.07 SE). Probabilities of site occupancy and reproduction were substantially greater at sample sites that were occupied by successful breeders in the previous year, indicating the presence of sites that were consistently used by successfully reproducing eagles. We found strong evidence for nonrandom spatial distribution in both occupancy and reproduction: Sites with the greatest potential for occupancy were characterized by rugged terrain conditions with intermediate amounts of grassland interspersed with patches of oak woodland and coniferous forest, whereas successful reproduction was most strongly associated with the amount of precipitation that a site received during the nesting period. Our findings highlight the contribution of consistently occupied and productive breeding sites to overall productivity of the local breeding population, and show that both occupancy and reproduction at these sites were maintained even during a period of exceptional drought. Our approach to quantifying and mapping site quality should be especially useful for the spatial prioritization of compensation measures intended to help offset the impacts of increasing human land use and development on Golden Eagles and their habitats.

California↗

USGS2017

Patterns of spatial distribution of golden eagles across North America: How do they fit into existing landscape-scale mapping systems?

Conserving wide-ranging animals requires knowledge about their year-round movements and resource use. Golden Eagles ( Aquila chrysaetos ) exhibit a wide range of movement patterns across North America. We combined tracking data from 571 Golden Eagles from multiple independent satellite-telemetry projects from North America to provide a comprehensive look at the magnitude and extent of these movements on a continental scale. We compared patterns of use relative to four alternative administrative and ecological mapping systems, namely Bird Conservation Regions (BCRs), U.S. administrative migratory bird flyways, Migratory Bird Joint Ventures, and Landscape Conservation Cooperatives. Our analyses suggested that eagles initially captured in eastern North America used space differently than those captured in western North America. Other groups of eagles that exhibited distinct patterns in space use included long-distance migrants from northern latitudes, and southwestern and Californian desert residents. There were also several groupings of eagles in the Intermountain West. Using this collaborative approach, we have identified large-scale movement patterns that may not have been possible with individual studies. These results will support landscape-scale conservation measures for Golden Eagles across North America.

Journal of Raptor Research↗

USGS2012

Hybridization among Arctic white-headed gulls (Larus spp.) obscures the genetic legacy of the Pleistocene

We studied the influence of glacial oscillations on the genetic structure of seven species of white-headed gull that breed at high latitudes ( Larus argentatus, L. canus, L. glaucescens, L. glaucoides, L. hyperboreus, L. schistisagus, and L. thayeri ). We evaluated localities hypothesized as ice-free areas or glacial refugia in other Arctic vertebrates using molecular data from 11 microsatellite loci, mitochondrial DNA (mtDNA) control region, and six nuclear introns for 32 populations across the Holarctic. Moderate levels of genetic structure were observed for microsatellites ( F ST = 0.129), introns ( Φ ST = 0.185), and mtDNA control region ( Φ ST = 0.461), with among-group variation maximized when populations were grouped based on subspecific classification. Two haplotype and at least two allele groups were observed across all loci. However, no haplotype/allele group was composed solely of individuals of a single species, a pattern consistent with recent divergence. Furthermore, northernmost populations were not well differentiated and among-group variation was maximized when L. argentatus and L. hyberboreus populations were grouped by locality rather than species, indicating recent hybridization. Four populations are located in putative Pleistocene glacial refugia and had larger t estimates than the other 28 populations. However, we were unable to substantiate these putative refugia using coalescent theory, as all populations had genetic signatures of stability based on mtDNA. The extent of haplotype and allele sharing among Arctic white-headed gull species is noteworthy. Studies of other Arctic taxa have generally revealed species-specific clusters as well as genetic structure within species, usually correlated with geography. Aspects of white-headed gull behavioral biology, such as colonization ability and propensity to hybridize, as well as their recent evolutionary history, have likely played a large role in the limited genetic structure observed.

Ecology and Evolution↗