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Geology topics

Colleen M. Handel

Publications and source records attributed to Colleen M. Handel.

At least 55 records · Page 3Linked to original sources

Reviving common standards in point-count surveys for broad inference across studies

We revisit the common standards recommended by Ralph et al. (1993, 1995a) for conducting point-count surveys to assess the relative abundance of landbirds breeding in North America. The standards originated from discussions among ornithologists in 1991 and were developed so that point-count survey data could be broadly compared and jointly analyzed by national data centers with the goals of monitoring populations and managing habitat. Twenty years later, we revisit these standards because (1) they have not been universally followed and (2) new methods allow estimation of absolute abundance from point counts, but these methods generally require data beyond the original standards to account for imperfect detection. Lack of standardization and the complications it introduces for analysis become apparent from aggregated data. For example, only 3% of 196,000 point counts conducted during the period 1992-2011 across Alaska and Canada followed the standards recommended for the count period and count radius. Ten-minute, unlimited-count-radius surveys increased the number of birds detected by >300% over 3-minute, 50-m-radius surveys. This effect size, which could be eliminated by standardized sampling, was ≥10 times the published effect sizes of observers, time of day, and date of the surveys. We suggest that the recommendations by Ralph et al. (1995a) continue to form the common standards when conducting point counts. This protocol is inexpensive and easy to follow but still allows the surveys to be adjusted for detection probabilities. Investigators might optionally collect additional information so that they can analyze their data with more flexible forms of removal and time-of-detection models, distance sampling, multiple-observer methods, repeated counts, or combinations of these methods. Maintaining the common standards as a base protocol, even as these study-specific modifications are added, will maximize the value of point-count data, allowing compilation and analysis by regional and national data centers.

Condor

Wildlife health in a rapidly changing North: focus on avian disease

Climate-related environmental changes have increasingly been linked to emerging infectious diseases in wildlife. The Arctic is facing a major ecological transition that is expected to substantially affect animal and human health. Changes in phenology or environmental conditions that result from climate warming may promote novel species assemblages as host and pathogen ranges expand to previously unoccupied areas. Recent evidence from the Arctic and subarctic suggests an increase in the spread and prevalence of some wildlife diseases, but baseline data necessary to detect and verify such changes are still lacking. Wild birds are undergoing rapid shifts in distribution and have been implicated in the spread of wildlife and zoonotic diseases. Here, we review evidence of current and projected changes in the abundance and distribution of avian diseases and outline strategies for future research. We discuss relevant climatic and environmental factors, emerging host–pathogen contact zones, the relationship between host condition and immune function, and potential wildlife and human health outcomes in northern regions.

Frontiers in Ecology and the Environment

Residency times and patterns of movement of postbreeding dunlin on a subarctic staging area in Alaska

Understanding how individuals use key resources is critical for effective conservation of a population. The Yukon-Kuskokwim Delta (YKD) in western Alaska is the most important postbreeding staging area for shorebirds in the subarctic North Pacific, yet little is known about movements of shorebirds there during the postbreeding period. To address this information gap, we studied residency times and patterns of movement of 17 adult and 17 juvenile radio-marked Dunlin (Calidris alpina) on the YKD between early August and early October 2005. Throughout this postbreeding period, during which Dunlin were molting, most birds were relocated within a 130 km radius of their capture site on the YKD, but three birds were relocated more than 600 km to the south at estuaries along the Alaska Peninsula. On average, juvenile Dunlin were relocated farther away from the banding site (median relocation distance = 36.3 km) than adult Dunlin (median relocation distance = 8.8 km). Post-capture, minimum lengths of stay by Dunlin on the YKD were not significantly different between juveniles (median = 19 days) and adults (median = 23 days), with some birds staging for more than 50 days. Body mass at time of capture was the best single variable explaining length of stay on the YKD, with average length of stay decreasing by 2.5 days per additional gram of body mass at time of capture. Conservation efforts for postbreeding shorebirds should consider patterns of resource use that may differ not only by age cohort but also by individual condition.

Alaska

Macroscopic, histologic, and ultrastructural lesions associated with avian keratin disorder in Black-capped Chickadees (Poecile atricapillus)

An epizootic of beak abnormalities (avian keratin disorder) was recently detected among wild birds in Alaska. Here we describe the gross, histologic, and ultrastructural features of the disease in 30 affected adult black-capped chickadees (Poecile atricapillus). Grossly, there was elongation of the rhamphotheca, with varying degrees of lateral deviation, crossing, and gapping between the upper and lower beak. Not uncommonly, the claws were overgrown, and there was alopecia, scaling, and crusting of the skin. The most prominent histopathologic features in the beak included epidermal hyperplasia, hyperkeratosis, and core-like intrusions of necrotic debris. In affected birds, particularly those with moderate to severe beak overgrowth, there was remodeling of premaxillary and mandibular bones and various dermal lesions. Lesions analogous to those found in beaks were present in affected claws, indicating that this disorder may target both of these similar tissues. Mild to moderate hyperkeratosis occurred in other keratinized tissues, including skin, feather follicles, and, occasionally, sinus epithelium, but typically only in the presence of microbes. We did not find consistent evidence of a bacterial, fungal, or viral etiology for the beak lesions. The changes observed in affected birds did not correspond with any known avian diseases, suggesting a potentially novel hyperkeratotic disorder in wild birds.

Alaska

Intercontinental migratory connectivity and population structuring of Dunlins from western Alaska

The Dunlin (Calidris alpina) is a polytypic shorebird with complex patterns of distribution and migration throughout its holarctic range. We analyzed mark-re sighting data obtained between 1977 and 2010 from birds captured at two major staging areas in western Alaska to test the hypothesis that the migration patterns of Alaskan populations are a mixture of parallel and chain, similar to those of Dunlin populations in the western Palearctic. Birds marked on the Yukon—Kuskokwim Delta were found wintering in both Asia and North America, which documented the unexpected mixing of C. a. arcticola from northern Alaska and C. a. pacifica from western Alaska and contradicted our initial prediction of parallel migration pathways for these two subspecies. In its North American winter range C. a. pacifica segregated according to location of marking, confirming our prediction of a chain migration pattern within this population. Individuals of C. a. pacifica marked on the delta were resighted significantly farther north, mostly in southern British Columbia and Washington, than birds marked on the second, more southerly staging area on the Alaska Peninsula, which were resighted primarily in the San Francisco Bay area of northern California. We recommend additional studies use a combination of intrinsic and extrinsic markers to quantify the strength of migratory connectivity between breeding, staging, and wintering areas. Such information is needed to guide conservation efforts because the Dunlin and other waterbirds are losing intertidal habitats at an unprecedented rate and scale, particularly in the Yellow Sea and other parts of Asia.

Alaska

Changing Arctic ecosystems--the role of ecosystem changes across the Boreal-Arctic transition zone on the distribution and abundance of wildlife populations

Arctic and boreal ecosystems provide important breeding habitat for more than half of North America’s migratory birds as well as many resident species. Northern landscapes are projected to experience more pronounced climate-related changes in habitat than most other regions. These changes include increases in shrub growth, conversion of tundra to forest, alteration of wetlands, shifts in species’ composition, and changes in the frequency and scale of fires and insect outbreaks. Changing habitat conditions, in turn, may have significant effects on the distribution and abundance of wildlife in these critical northern ecosystems. The U.S. Geological Survey (USGS) is conducting studies in the Boreal–Arctic transition zone of Alaska, an environment of accelerated change in this sensitive margin between Arctic tundra and boreal forest.

Alaska

Stable isotopes identify dietary changes associated with beak deformities in Black-Capped Chickadees ( Poecile atricapillus )

A large number of beak deformities of unknown etiology have recently been reported in Black-capped Chickadees (Poecile atricapillus) and other resident avian species in Alaska. We investigated the potential association between diet and beak deformities. We analyzed carbon (δ13C) and nitrogen (δ15N) isotopes in whole blood of Black-capped Chickadees captured at three semiurban sites in south-central Alaska. For dietary analysis, we included natural foods (arthropods, seeds, and berries) and anthropogenic items commonly provided in bird feeders (sunflower seeds, peanut butter, and suet). Blood samples from individuals with beak deformities exhibited lower δ15N values and more variable δ13C values than birds with normal beaks. Isotopic values of blood also differed by location for both carbon and nitrogen, but we did not detect a difference in natural dietary items across the three sites. Contributions of individual diet items differed between birds with and without beak deformities, a pattern that likely reflected reduced function of the beak. Affected birds generally consumed fewer arthropods and sunflower seeds and more peanut butter and natural seeds and berries. Although some individuals with beak deformities relied heavily on feeder foods, we did not find evidence of an anthropogenic food source shared by all affected birds. In addition, dietary differences were most pronounced for moderately to severely affected birds, which suggests that these differences are more likely to be a consequence than a cause of deformities.

Alaska

Small population size of Pribilof Rock Sandpipers confirmed through distance-sampling surveys in Alaska

The Rock Sandpiper ( Calidris ptilocnemis ) is endemic to the Bering Sea region and unique among shorebirds in the North Pacific for wintering at high latitudes. The nominate subspecies, the Pribilof Rock Sandpiper ( C. p. ptilocnemis ), breeds on four isolated islands in the Bering Sea and appears to spend the winter primarily in Cook Inlet, Alaska. We used a stratified systematic sampling design and line-transect method to survey the entire breeding range of this population during springs 2001-2003. Densities were up to four times higher on the uninhabited and more northerly St. Matthew and Hall islands than on St. Paul and St. George islands, which both have small human settlements and introduced reindeer herds. Differences in density, however, appeared to be more related to differences in vegetation than to anthropogenic factors, raising some concern for prospective effects of climate change. We estimated the total population at 19 832 birds (95% CI 17 853–21 930), ranking it among the smallest of North American shorebird populations. To determine the vulnerability of C. p. ptilocnemis to anthropogenic and stochastic environmental threats, future studies should focus on determining the amount of gene flow among island subpopulations, the full extent of the subspecies' winter range, and the current trajectory of this small population.

Alaska

Evidence of accelerated beak growth associated with avian keratin disorder in black-capped chickadees (Poecile atricapillus)

We recently documented an epizootic of beak deformities in more than 2,000 Black-capped Chickadees ( Poecile atricapillus ) and other wild bird species in North America. This emerging avian disease, which has been termed avian keratin disorder , results in gross overgrowth of the rhamphotheca, the outer, keratinized layer of the beak. To test the hypothesis that the beak deformities characteristic of this disorder are associated with accelerated keratin production, we measured rates of beak growth and wear in affected Black-capped Chickadees ( n =16) and a control sample of unaffected chickadees ( n =14) collected from south-central (61°09′–61°38′N, 149°11′–149°48′W) and interior Alaska (64°51′–64°53′N, 147°49′–147°59′W). Rates of absolute growth were 50–100% higher in affected birds than they were in control birds and exceeded records from other passerine species. These results suggest that abnormally rapid epidermal growth is the primary physical mechanism by which beak deformities develop and are maintained in affected chickadees. Although beak overgrowth typically worsened over time, differential patterns of wear influenced the severity and morphology of deformities. In some cases, the effects of accelerated keratin growth were partially mitigated by frequent breakage of rhamphothecal tips. However, mortalities occurred in 9 of 16 birds (56%) with beak deformities during the study, suggesting that avian keratin disorder results in severe health consequences for affected birds. Additional study of factors that control beak keratin production is needed to understand the pathogenesis of this debilitating disease in wild birds.

Alaska

Microanatomy of passerine hard-cornified tissues: Beak and claw structure of the black-capped chickadee (Poecile atricapillus)

The microanatomy of healthy beaks and claws in passerine birds has not been well described in the literature, despite the importance of these structures in avian life. Histological processing of hard‐cornified tissues is notoriously challenging and only a few reports on effective techniques have been published. An emerging epizootic of beak deformities among wild birds in Alaska and the Pacific Northwest region of North America recently highlighted the need for additional baseline information about avian hard‐cornified structures. In this study, we examine the beak and claw of the Black‐capped Chickadee ( Poecile atricapillus ), a common North American passerine that is affected by what has been described as “avian keratin disorder.” We use light and scanning electron microscopy and high‐magnification radiography to document the healthy microanatomy of these tissues and identify features of functional importance. We also describe detailed methods for histological processing of avian hard‐cornified structures and discuss the utility of special stains. Results from this study will assist in future research on the functional anatomy and pathology of hard‐cornified structures and will provide a necessary reference for ongoing investigations of avian keratin disorder in Black‐capped Chickadees and other wild passerine species.

Journal of Morphology

A natural experiment on the condition-dependence of achromatic plumage reflectance in black-capped chickadees

Honest advertisement models posit that only individuals in good health can produce and/or maintain ornamental traits. Even though disease has profound effects on condition, few studies have experimentally tested its effects on trait expression and even fewer have identified a mechanistic basis for these effects. Recent evidence suggests that black and white, but not grey, plumage colors of black-capped chickadees (Poecile atricapillus) are sexually selected. We therefore hypothesized that birds afflicted with avian keratin disorder, a condition that affects the beak and other keratinized tissues, would show reduced expression of black and white, but not grey, color. UV-vis spectrometry of black-capped chickadees affected and unaffected by avian keratin disorder revealed spectral differences between them consistent with this hypothesis. To elucidate the mechanistic bases of these differences, we used scanning electron microscopy (SEM), electron-dispersive x-ray spectroscopy (EDX) and a feather cleaning experiment. SEM showed extreme feather soiling in affected birds, and EDX revealed that this was most likely from external sources. Experimentally cleaning the feathers increased color expression of ornamental feathers of affected, but not unaffected, birds. These data provide strong evidence that black and white color is an honest indicator in chickadees, and that variation in feather dirtiness, likely due to differences in preening behavior is a mechanism for this association.

PLoS ONE

Wayward youth: Trans-Beringian movement and differential southward migration by juvenile sharp-tailed sandpipers

The sharp-tailed sandpiper ( Calidris acuminata ) is a long-distance migrant that travels each year from breeding grounds in the Russian Arctic to nonbreeding areas in Australasia. Most adults migrate rapidly from breeding grounds along a largely inland route through Asia. Here we report on the highly unusual migratory strategy of this species in which some juveniles, but virtually no adults, take a pronounced detour to western Alaska before proceeding on southward migration. We analyzed data from our own studies in this region and published and unpublished observations and specimen records of sharptailed sandpipers from the entire Pacific Basin. Each autumn, sharp-tailed sandpipers began arriving on coastal graminoid meadows and intertidal habitats throughout western Alaska during the last half of August and the last sandpipers departed from southwestern Alaska during October and November. Body mass of birds banded or collected across multiple years and sites in western Alaska ( n = 330) increased by an average of 0.57 ± 0.06 g per day between mid-August and late October. Records suggest a small, regular movement of juveniles (and a very few adults) along the Asiatic coast, but we estimate from surveys that a few tens of thousands of juveniles stage in western Alaska each autumn. The distribution of sight and specimen records from the Pacific Basin during autumn suggests strongly age-segregated migration routes, with the principal migration of juveniles crossing central and western Oceania in a possible nonstop trans-Pacific flight from Alaska. This is only the second well-documented case of differential migration among birds that involves different routes for adults and juveniles, and it raises intriguing questions about how and why this system has evolved.

Arctic

Epizootic of beak deformities among wild birds in Alaska: An emerging disease in North America?

The sudden appearance of a large cluster of animals with gross abnormalities may signal a significant change in an ecosystem. We describe an unusual concentration of beak deformities that appear to have arisen rapidly within Alaska and now extend southward along the Pacific Coast. In Alaska we have documented 2,160 Black-capped Chickadees ( Poecile atricapillus ) and 435 individuals of 29 other species of birds, primarily during the past decade, with grossly overgrown and often crossed beaks. The annual prevalence of beak abnormalities among adult Black-capped Chickadees in south-central Alaska varied from 3.6% to 9.7% and averaged 6.5 ± 0.5% between 1999 and 2008. Only 0.05 ± 0.05% of nestlings and 0.3 ± 0.2% of juveniles <6 months old had abnormal beaks, which suggests that this is either a latent developmental or an acquired condition. We documented 80 cases in which a Black-capped Chickadee captured with an apparently normal beak was subsequently recaptured with a beak abnormality and 8 cases in which a beak deformity was no longer detectable upon recapture. Necropsy and histopathology of a sample of affected individuals provided no conclusive evidence of the etiology of this condition. Deformities appear to affect primarily the keratin layer of the beak and may result from abnormally rapid growth of the rhamphotheca. Some affected birds also exhibited lesions in other keratinized tissues of the skin, legs, feet, claws, and feathers, which may represent a systemic disorder or secondary conditions. Additional studies are currently underway to determine diagnostic signs and the underlying cause of this avian keratin disorder.

Alaska

Beak deformities in Northwestern Crows: Evidence of a multispecies epizootic

Beak abnormalities are rare among adult birds and, typically, are not widespread in a given population, within a region, or across multiple species. A high concentration of beak deformities was recently documented in Black-capped Chickadees ( Poecile atricapillus ) and other resident avian species in Alaska. We describe a parallel condition in Northwestern Crows ( Corvus caurinus ) that signals the emergence of a multispecies epizootic. On the basis of 186 Northwestern Crows captured at six sites in Alaska during 2007 and 2008, we estimated the prevalence of beak deformities in adults to be 16.9 ± 5.3%, the highest rate of gross deformities ever recorded in a wild bird population. Prevalence varied among sites and was as high as 36% on the Kenai Peninsula, which suggests possible epizootic clusters. We also documented beak abnormalities in an additional 148 Northwestern Crows in south-central and southeastern Alaska and in 64 crows near Vancouver, British Columbia, and Puget Sound, Washington, a region where both Northwestern Crows and American Crows ( C. brachyrhynchos ) occur. The increase in frequency and distribution of crows observed with abnormal beaks throughout the Pacific Northwest since the late 1990s indicates a geographic expansion of this problem. Affected crows exhibited elongated and often crossed beaks that were morphologically similar to deformities documented in Black-capped Chickadees and other species in Alaska over approximately the same period. Additional research is needed to determine the etiology and potential adverse effects on bird populations affected by this disorder.

Alaska, British Columbia, Washington

Estimation of avian population sizes and species richness across a boreal landscape in Alaska

We studied the distribution of birds breeding within five ecological landforms in Yukon-Charley Rivers National Preserve, a 10,194-km 2 roadless conservation unit on the Alaska-Canada border in the boreal forest zone. Passerines dominated the avifauna numerically, comprising 97% of individuals surveyed but less than half of the 115 species recorded in the Preserve. We used distance-sampling and discrete-removal models to estimate detection probabilities, densities, and population sizes across the Preserve for 23 species of migrant passerines and five species of resident passerines. Yellow-rumped Warblers (Dendroica coronata) and Dark-eyed Juncos (Junco hyemalis) were the most abundant species, together accounting for 41% of the migrant passerine populations estimated. White-winged Crossbills (Loxia leucoptera), Boreal Chickadees (Poecile hudsonica), and Gray Jays (Perisoreus canadensis) were the most abundant residents. Species richness was greatest in the Floodplain/Terrace landform flanking the Yukon River but densities were highest in the Subalpine landform. Species composition was related to past glacial history and current physiography of the region and differed notably from other areas of the northwestern boreal forest. Point-transect surveys, augmented with auxiliary observations, were well suited to sampling the largely passerine avifauna across this rugged landscape and could be used across the boreal forest region to monitor changes in northern bird distribution and abundance. ?? 2009 The Wilson Ornithological Society.

Wilson Journal of Ornithology

Brood amalgamation in the Bristle-thighed Curlew Numenius tahitiensis : process and function

Alloparental care in birds generally involves nonbreeding adults that help at nests or breeding adults that help raise young in communal nests. A less often reported form involves the amalgamation of broods, where one or more adults care for young that are not their own. We observed this phenomenon among Bristle-thighed Curlew Numenius tahitiensis broods in western Alaska during 1990–1992. Amalgamation of broods generally involved the formation of temporary and extended associations. Temporary associations were formed by the incidental convergence of broods soon after they left their nests. During this period, parents defended distinct brood-rearing areas, were antagonistic to conspecifics and remained together for less than 3 days. Extended associations formed when chicks were 1–2 weeks old. Here, parents and their broods occupied distinct, but adjacent, brood-rearing areas and moved around as a unit. Whether a brood participated in either temporary or extended associations or remained solitary appeared to depend on brood density in the immediate area and on hatching date. When chicks were 3–4 weeks old, aggregations of up to ten broods formed wherein young mixed and parents defended a common brood-rearing area. All broods (n = 48) that survived to fledging joined such aggregations. Alloparental care involved only antipredator defence and was not associated with activities such as feeding and brooding. Most female parents abandoned their broods shortly after the young could fly and when aggregations were forming. The female parent of a pair always deserted its young before or on the same day as the male parent and, in every aggregation, one or two males continued to tend young for about 5 days longer than other male parents. In most cases, adults deserted the young 2–6 days before the young departed the area when about 38 days old. Bristle-thighed Curlews also formed temporary associations with American and Pacific Golden Plover Pluvialis dominica and Pluvialis fulva, Whimbrel Numenius phaeopus, Bar-tailed Godwit Limosa lapponica, Western Sandpiper Cal-idris mauri and Long-tailed Skua Stercorarius longicaudus. Curlews and other larger bodied species commonly attack-mobbed predators together, whereas smaller bodied species generally gave alarm calls and circled the predators. For all species, the intensity of antipredator defence by attending adults gradually decreased as young became older and aggregations formed. We suggest that amalgamation of broods among Bristle-thighed Curlew enhances predator defence, aids in the process of flock formation for migrating young, and allows females and some males to desert their young earlier.

Alaska

Use of buccal swabs for sampling DNA from nestling and adult birds

We evaluated the feasibility and efficiency of using swabs to collect buccal epithelial cells from small (2‐ to 13‐ g ) birds as a source of DNA for genetic studies. We used commercially available buccal swab kits to collect samples from 42 adult and 39 nestling (4‐ to 8‐day‐old) black‐capped chickadees (Poecile atricapillus) and from 6 4‐day‐old nestling boreal chickadees (P. hudsonica). We compared DNA from buccal epithelial samples to that from blood samples from the same individuals. We extracted sufficient quantities of DNA for analysis from all buccal samples, and samples remained viable even after being stored in original plastic sampling tubes at room temperature for up to 18 months. Yields were equivalent whether extracted using the proprietary quick‐extraction solution provided with buccal swab kits or using a salt‐extraction process with inexpensive reagents. Yields of DNA from buccal samples were consistently lower than those from blood samples, but quantities were sufficient for all analyses. Assignment of sex, based on DNA extracted from paired buccal and blood samples, was identical for all 87 birds. We found no difference in the genotypes obtained from buccal and blood samples for 12 individuals tested using 5 microsatellite loci and found perfect concordance in sequencing of an 823‐base‐pair segment within the control region of mitochondrial DNA for 7 individuals tested. Use of buccal swabs is highly recommended as a rapid, noninvasive technique for sampling avian genomic DNA, especially for extremely young altricial nestlings or small‐bodied adults, or for any birds for which blood sampling may be impossible or stressful.

Wildlife Society Bulletin

Inventory of montane-nesting birds in the Arctic Network of National Parks, Alaska

The Alaska Science Center of the U.S. Geological Survey conducted an inventory of birds in montane areas of the four northern parks in the Arctic Network of National Parks, Alaska. This effort represents the first comprehensive assessment of breeding range and habitat associations for the majority of avian species in the Arctic Network. Ultimately, these data provide a framework upon which to design future monitoring programs. A stratified random sampling design was used to select sample plots (n = 73 plots) that were allocated in proportion to the availability of ecological subsections. Point counts (n = 1,652) were conducted to quantify abundance, distribution, and habitat associations of birds. Field work occurred over three years (2001 to 2003) during two-week-long sessions in late May through early June that coincided with peak courtship activity of breeding birds. Totals of 53 species were recorded in Cape Krusenstern National Monument, 91 in Noatak National Preserve, 57 in Kobuk Valley National Park, and 96 in Gates of the Arctic National Park and Preserve. Substantial proportions of species in individual parks are considered species of conservation concern (18 to 26%) or species of stewardship responsibility of the land managers in the region (8 to 18%). The most commonly detected passerines on point counts included Redpoll spp. ( Carduelis flammea and C. hornemanni ), Savannah Sparrow ( Passerculus sandwichensis ), and American Tree Sparrow ( Spizella arborea ). The most numerous shorebirds were American Golden-Plover ( Pluvialis dominica ), Wilson’s Snipe ( Gallinago delicata ), and Whimbrel ( Numenius phaeopus ). Most species were detected at low rates, reflecting the low breeding densities (and/or low detectabilities) of birds in the montane Arctic. Suites of species were associated with particular ranges of elevation and showed strong associations with particular habitat types.

Alaska