Geology topics

Christopher Ottinger

Publications and source records attributed to Christopher Ottinger.

8 recordsLinked to original sources

USGS2024

Invasive blue catfish in the Chesapeake Bay: A risk to realizing Bay restoration investments

Introduction The partners of the Chesapeake Bay are investing billions of dollars in the restoration of critical habitats to improve conditions for people and living resources throughout the Bay and its watershed. However, the recent proliferation of invasive Ictalurus furcatus (blue catfish) in the Chesapeake Bay’s major rivers has the potential to disrupt these restoration efforts and limit the full potential improvement of the ecosystem. The U.S. Geological Survey can help respond to this management challenge in the Nation’s largest estuary by leveraging its leadership and technical capabilities to work with resource managers, academics, and other stakeholders.

Chesapeake Bay↗

USGS2023

Application of a lipopolysaccharide (LPS)-stimulated mitogenesis assay in smallmouth bass (Micropterus dolomieu) to augment wild fish health studies

The utility of a functional immune assay for smallmouth bass ( Micropterus dolomieu ) lymphocyte mitogenesis was evaluated. Wild populations in the Potomac River have faced disease and mortality with immunosuppression from exposure to chemical contaminants a suspected component. However, a validated set of immune parameters to screen for immunosuppression in wild fish populations is not available. Prior to use in ecotoxicology studies, ancillary factors influencing the mitogenic response need to be understood. The assay was field-tested with fish collected from three sites in West Virginia as part of health assessments occurring in spring (pre-spawn; April–May) and fall (recrudescence; October–November). Anterior kidney leukocytes were exposed to lipopolysaccharide (LPS) from E.coli O111:B4 or mitogen-free media and proliferation was measured using imaging flow cytometry with advanced machine learning to distinguish lymphocytes. An anti-smallmouth bass IgM monoclonal antibody was used to identify IgM+ lymphocytes. Lymphocyte mitogenesis, or proliferative responses, varied by site and season and positively and negatively correlated with factors such as sex, age, tissue parasites, and macrophage aggregates. Background proliferation of IgM− lymphocytes was negatively correlated to LPS-induced proliferation in both seasons at all sites, but only in spring for IgM+ lymphocytes. The results demonstrate that many factors, in addition to chemical contaminants, may influence lymphocyte proliferation.

Virginia, West Virginia↗

USGS2021

Production and characterization of a mouse monoclonal antibody against smallmouth bass (Micropterus dolomieu) IgM

A murine monoclonal antibody (mAb, IgG2a) was produced for the detection of smallmouth bass ( Micropterus dolomieu ) immunoglobulin (IgM). The antibody is specific for IgM heavy chain and was shown to also recognize the Ig heavy chain of largemouth bass ( Micropterus salmoides ) and bluegill ( Lepomis macrochirus ) using Western Blot analysis of plasma from 9 teleost taxa. When applied to the analysis of smallmouth bass total plasma IgM using ELISA, the mAb was found to be effective when used in an inhibition kinetic assay.

Fish & Shellfish Immunology↗

USGS2019

Influenza A virus detected in native bivalves in waterfowl habitat of the Delmarva Peninsula, USA

We evaluated the prevalence of influenza A virus (IAV) in different species of bivalves inhabiting natural water bodies in waterfowl habitat along the Delmarva Peninsula and Chesapeake Bay in eastern Maryland. Bivalve tissue from clam and mussel specimens ( Macoma balthica , Macoma phenax , Mulinia sp., Rangia cuneata , Mya arenaria , Guekensia demissa , and an undetermined mussel species) from five collection sites was analyzed for the presence of type A influenza virus by qPCR targeting the matrix gene. Of the 300 tissue samples analyzed, 13 samples (4.3%) tested positive for presence of influenza virus A matrix gene. To our knowledge, this is the first report of detection of IAV in the tissue of any bivalve mollusk from a natural water body.

Delaware, Maryland, Virginia↗

USGS2019

In vitro immune function in laboratory-reared age-0 smallmouth bass (Micropterus dolomieu) relative to diet

Smallmouth bass ( Micropterus dolomieu ) are used as an indicator species in environmental monitoring and assessment studies. However, laboratory-based studies for methods development and effector assessment are limited for this species. Nutrition, a known modulator of teleost physiological responses including immune function, is a critical knowledge-gap sometimes overlooked in the design of laboratory studies. We report the results from a study evaluating a commercially available artificial pelleted diet for bass and live feed (fathead minnows). Following a six-month diet-acclimation period, age-0 smallmouth bass were assessed using morphometric measures, histologic and immune-function end points using conventional methods, miniaturized cell isolation and assay methods as well as imaging flow cytometry. Fish on the two diets did not significantly differ in length, weight, or condition factor, indicating that growth was similar in the two groups. Histologic examination revealed relatively higher levels of macrophage aggregates and accumulation of ceroid/lipofuscin in the spleen as well as hepatocyte changes in the pellet-fed group. Leukocytes from the pellet-fed group exhibited significantly elevated bactericidal activity and significantly depressed mitogen response compared to fish fed live feed. Following exposure to a known inducer of inflammatory responses, bacterial lipopolysaccharide, responses including the transition of leukocytes to an apoptotic/necrotic condition differed significantly based on diet. Histologic findings were consistent with the occurrence of diet-related oxidative stress in the pellet-fed fish. Oxidative stress can be induced by multiple factors including environmental pollutants. For a diet to be useful in laboratory-based studies, it cannot elicit response that could also be induced by experimental treatments. To do so greatly complicates the detection of experimental effects. Until an artificial diet is developed for smallmouth bass that does not produce potentially confounding conditions for laboratory-based studies, use of a live feed appears to be the best option.

Fish & Shellfish Immunology↗

USGS2018

A method for determining avian influenza virus hemagglutinin and neuraminidase subtype association

Methods for grouping specific avian influenza virus (AIV) hemagglutinin (HA) and neuraminidase (NA) subtype reverse-transcription polymerase chain reaction (RT-PCR) products into HA:NA subtypes when egg incubation is technically not feasible were evaluated. These approaches were adopted for use as post hoc methods after melt curve analysis. The methods are based on ratios obtained from amplicon copy count and amplicon molarity and were founded on the premise that infectious particles contain an equal copy count of single-stranded ribonucleic acid segments that encode HA or NA, and thus subtype-specific amplicons from a single AIV isolate should yield a theoretical HA:NA ratio of 1. Single and mixed HA:NA AIV subtype samples were evaluated to determine whether the calculated HA:NA ratios would approach the theoretical value. With these samples, preference was given to the molarity methods to better define and correct for the effects of multiple potential amplicons in the amplification mix. Further, the molarity method was used to evaluate pond sediment spiked with intact virus of known HA:NA subtype to determine whether the method is sufficiently robust to be used with complex samples, such as those acquired from waterfowl habitat. This was a proof-of-concept study intended to guide future methods development. The methods here are not meant to be applied in any other context. From the analysis of fully characterized isolates of North American AIV, the HA:NA molarity-based ratios were found to be 1.63 ± 0.75 (mean ± standard deviation) when corrected for the difference in amplification strength and the production of multiple amplicons in some reactions using equations developed in this study. Copy count HA:NA ratios, obtained from HA and NA subtype (RT-qPCR), were 1.146 ± 0.124 (mean ± standard deviation) when corrected for amplification efficiency. Correct associations of HA:NA subtype sample composition were made with mixed samples containing 1 HA and 2 NA, and 2 HA and 2 NA. When spiked pond sediment was evaluated, the molar ratio obtained for the H4 and N6 identified in the sample was 1.28 with correction and 1.14 without correction.

Open-File Report↗

USGS2017

Molecular detection of avian influenza virus from sediment samples in waterfowl habitats on the Delmarva Peninsula, United States

Avian influenza viruses (AIV) affect many species of birds including waterfowl and may persist in sediment in aquatic habitats. Sediment samples were collected from two areas representative of prime migration and overwintering waterfowl habitat in Dorchester County, Maryland in the fall and winter of 2013–2014. Samples were screened for the presence of AIV via reverse transcriptase–quantitative PCR targeting the matrix gene. Although 13.6% of sediment samples were positive for the AIV matrix gene across all collection dates and locations, differences in detection were noted with location and collection season. Percentage of AIV-positive sediment samples recovered corresponded to trends in waterfowl abundance at collection sites both temporally and spatially. These findings provide further support for the assertion that the presence of AIV in the aquatic environment is likely affected by the total number, site-specific density, and array of waterfowl species.

Delmarva Peninsula↗

USGS2009

Distribution, Health, and Development of Larval and Juvenile Lost River and Shortnose Suckers in the Williamson River Delta Restoration Project and Upper Klamath Lake, Oregon: 2008 Annual Data Summary

Federally endangered Lost River sucker Deltistes luxatus and shortnose sucker Chasmistes brevirostris were once abundant throughout their range but populations have declined; they have been extirpated from several lakes, and may no longer reproduce in others. Poor recruitment into the adult spawning populations is one of several reasons cited for the decline and lack of recovery of these species, and may be the consequence of high mortality during juvenile life stages. High larval and juvenile sucker mortality may be exacerbated by an insufficient quantity of suitable rearing habitat. Within Upper Klamath Lake, a lack of marshes also may allow larval suckers to be swept from suitable rearing areas downstream into the seasonally anoxic waters of the Keno Reservoir. The Nature Conservancy (TNC) flooded about 3,600 acres to the north of the Williamson River mouth (Tulana Unit) in October 2007, and about 1,400 acres to the south and east of the Williamson River mouth (Goose Bay Unit) a year later, to retain larval suckers in Upper Klamath Lake, create nursery habitat for suckers, and improve water quality. In collaboration with TNC, the Bureau of Reclamation, and Oregon State University, we began a long-term collaborative research and monitoring program in 2008 to assess the effects of the Williamson River Delta restoration on the early life-history stages of Lost River and shortnose suckers. Our approach includes two equally important aspects. One component is to describe habitat use and colonization processes by larval and juvenile suckers and non-sucker fish species. The second is to evaluate the effects of the restored habitat on the health and condition of juvenile suckers. This report contains a summary of the first year of data collected as a part of this monitoring effort.

Open-File Report↗