Geology topics

Ashley M. Lukasik

Publications and source records attributed to Ashley M. Lukasik.

2 recordsLinked to original sources

USGS2010

Relationship and variation of qPCR and culturable enterococci estimates in ambient surface waters are predictable

The quantitative polymerase chain reaction (qPCR) method provides rapid estimates of fecal indicator bacteria densities that have been indicated to be useful in the assessment of water quality. Primarily because this method provides faster results than standard culture-based methods, the U.S. Environmental Protection Agency is currently considering its use as a basis for revised ambient water quality criteria. In anticipation of this possibility, we sought to examine the relationship between qPCR-based and culture-based estimates of enterococci in surface waters. Using data from several research groups, we compared enterococci estimates by the two methods in water samples collected from 37 sites across the United States. A consistent linear pattern in the relationship between cell equivalents (CCE), based on the qPCR method, and colony-forming units (CFU), based on the traditional culturable method, was significant (P < 0.05) at most sites. A linearly decreasing variance of CCE with increasing CFU levels was significant (P < 0.05) or evident for all sites. Both marine and freshwater sites under continuous influence of point-source contamination tended to reveal a relatively constant proportion of CCE to CFU. The consistency in the mean and variance patterns of CCE versus CFU indicates that the relationship of results based on these two methods is more predictable at high CFU levels (e.g., log 10 CFU > 2.0/100 mL) while uncertainty increases at lower CFU values. It was further noted that the relative error in replicated qPCR estimates was generally higher than that in replicated culture counts even at relatively high target levels, suggesting a greater need for replicated analyses in the qPCR method to reduce relative error. Further studies evaluating the relationship between culture and qPCR should take into account analytical uncertainty as well as potential differences in results of these methods that may arise from sample variability, different sources of pollution, and environmental factors.

Environmental Science & Technology↗

USGS2010

Distribution of Escherichia coli and Enterococci in water, sediments, and bank soils along North Shore Channel between Bridge Street and Wilson Avenue, Metropolitan Water Reclamation District of Greater Chicago

The Metropolitan Water Reclamation District of Greater Chicago (MWRDGC) wished to know the distribution and potential sources of fecal indicator bacteria, E. coli and enterococci, in water, sediments, and upland soils along an upstream and downstream portion of the North Shore Channel (NSC) that is the receiving stream for the District’s North Side Water Reclamation Plant (NSWRP) outfall. Biweekly water and sediment samples were collected between August and October 2008 and included the following locations upstream of the outfall: Bridge Street (UPS-1), Oakton Street (UPS-2), the NSWRP outfall (OF), and downstream: Foster Avenue (DNS-1), and Wilson Avenue (DNS-2). E. coli and enterococci were consistently found in water and sediments at all sampling locations, with bacterial densities in water increasing below the NSWRP outfall; bacterial densities in sediment were more variable. On a relative measurement basis (i.e., 100 ml=100 g), both E. coli and enterococci densities were significantly higher in sediments than water. E. coli and enterococci were consistently recovered from bank soil along wooded, grassy, erosional, and depositional areas at two recreational parks, as well as other riparian areas along the river. Thus, soils along the river basin are likely sources of these bacteria to the NSC channel, introduced through runoff or other physical processes. Tributaries, such as the North Branch of the Chicago River (NBCR) that flow into NSC near Albany Ave, may provide a constant source of E. coli and enterococci to the NSC. Additionally, storm sewer outfalls may increase E. coli loadings to NSC during wet weather conditions. Our findings suggest that the abundance of nonpoint sources contributing to the overall fecal indicator bacteria (FIB) load in the NSC channel may complicate bacteria source determination and remediation efforts to protect the stream water quality.

Illinois↗