Geology topics

Amy McNally

Publications and source records attributed to Amy McNally.

17 recordsLinked to original sources

USGS2025

In situ, modeled, and earth observation monitoring of surface water availability in West African rangelands

Introduction: Rangeland ponds are vital to the livelihoods of pastoral and agropastoral communities in Africa, providing an important source of water for livestock. However, sparse instrumentation across much of Africa makes it extremely challenging to monitor surface water availability in these areas. Model estimates of surface water, for example, as used by the Famine Early Warning Systems Network (FEWS NET) Water Point Viewer, are one of the few operational tools available to monitor surface water stress across pastoral areas of the Sahel and East Africa. Methods: Water availability data from these models are difficult to validate. New methods using satellite data to classify surface water provide an opportunity to assess the performance of these tools. This study compares water availability estimates derived from Landsat and Sentinel 1 satellite imagery to in situ observations and model simulations of water availability in 22 ephemeral ponds located in the Ferlo region of Senegal. Results and discussion: The Active-Passive Water Classification (APWC) algorithm detected surface water at each location. Over 2022 and 2023, water was detected in pond locations annually at a frequency of 68.2% for all ponds and at a frequency of 43.8% for ponds with a surface area <10,000 square meters (m 2 ). The APWC results outperform global and continental surface water datasets in the Ferlo region. Seasonal water availability was captured in 12 ponds over the 2022 and 2023 seasons. The 12 locations can function as sentinel ponds to monitor local water availability. Study results demonstrate the viability of satellite methods to assess water availability in the region, as well as the challenges to using satellite-based methods to estimate water availability in small ponds.

Ferlo Region↗

USGS2024

ENSO-based outlook of droughts and agricultural outcomes in Afghanistan

Drought is one of the key drivers of food insecurity in Afghanistan, which is among the most food insecure countries in the world. In this study, we build on previous research and seek to answer the central question: “What is the influence of El Niño-Southern Oscillation (ENSO) on drought outlooks and agricultural yield outcome in Afghanistan, and how do these influences vary spatially ?” We do so by utilizing multiple indicators of droughts and available wheat yield reports. We find a clear distinction in the probability of drought (defined as being in the lower tercile) in Afghanistan during La Niña compared to El Niño events since 1981. The probability of drought in Afghanistan increased during La Niña, particularly in the North, Northeast, and West regions. La Niña events are related to an increase in the probability of snow drought, particularly in parts of the Amu Darya basin. It is found that relative to El Niño events, snow water equivalent [total runoff] during La Niña events January–March (March–July total runoff) decreases between 9% and 30% (28%–42%) for the five major basins in the country. The probability of agricultural drought during La Niña events is found to be higher than 70% in the rainfed and irrigated areas of the Northeast, North, and West regions. This result is at least partly supported by reported wheat yield composites related to La Niña events that tend to be lower than for El Niño events across all regions in the case of rainfed wheat (statistically significant in Northeast, West, and South regions) and in some cases for irrigated wheat. The results of this study have direct implications for improving early warning of worsening food insecurity in Afghanistan during La Niña events, given that we now have long-lead and skillful forecasts of ENSO up to 18–24 months in advance, which could potentially be used to provide earlier warning of worsening food insecurity in Afghanistan

Weather and Climate Extremes↗

USGS2023

A global long-term daily reanalysis of reference evapotranspiration for drought and food-security monitoring

NOAA has developed a global reference evapotranspiration (ET 0 ) reanalysis using the UN Food and Agriculture Organization formulation (FAO-56) of the Penman-Monteith equation forced by MERRA phase 2 (MERRA2) meteorological and radiative drivers. The NOAA ET 0 reanalysis is provided daily from January 1, 1980 to the near-present at a resolution of 0.5° latitude × 0.625° longitude. The reanalysis is verified against station data across southern Africa, a region presenting both significant challenges regarding hydroclimatic variability and observational quantity and quality and significant potential benefits to food-insecure populations. These data are generated from observations from the Southern African Science Service Centre for Climate Change and Adaptive Land Management (SASSCAL) network. We further verified globally against spatially distributed ET 0 derived from two reanalyses–the Global Data Assimilation System (GDAS) and Princeton Global Forcing (PGF)–and these verifications produced similar results, yet demonstrated wide regional and seasonal differences. We also present cases that verify the operational applicability of the reanalysis in long-established drought, famine, crop- and pastoral-stress metrics, and in predictability assessments of drought forecasts.

Nature Scientific Data↗

USGS2022

A Central Asia hydrologic monitoring dataset for food and water security applications in Afghanistan

From the Hindu Kush mountains to the Registan Desert, Afghanistan is a diverse landscape where droughts, floods, conflict, and economic market accessibility pose challenges for agricultural livelihoods and food security. The ability to remotely monitor environmental conditions is critical to support decision making for humanitarian assistance. The Famine Early Warning Systems Network (FEWS NET) Land Data Assimilation System (FLDAS) global and Central Asia data streams provide information on hydrologic states for routine integrated food security analysis. While developed for a specific project, these data are publicly available and useful for other applications that require hydrologic estimates of the water and energy balance. These two data streams are unique because of their suitability for routine monitoring, as well as for being a historical record for computing relative indicators of water availability. The global stream is available at ∼ 1-month latency, and monthly average outputs are on a 10 km grid from 1982–present. The second data stream, Central Asia (21–56 ∘ N, 30–100 ∘ E), at ∼ 1 d latency, provides daily average outputs on a 1 km grid from 2000–present. This paper describes the configuration of the two FLDAS data streams, background on the software modeling framework, selected meteorological inputs and parameters, and results from previous evaluation studies. We also provide additional analysis of precipitation and snow cover over Afghanistan. We conclude with an example of how these data are used in integrated food security analysis. For use in new and innovative studies that will improve understanding of this region, these data are hosted by U.S. Geological Survey data portals and the National Aeronautics and Space Administration (NASA). The Central Asia data described in this paper can be accessed via the NASA repository at https://doi.org/10.5067/VQ4CD3Y9YC0R (Jacob and Slinski, 2021), and the global data described in this paper can be accessed via the NASA repository at https://doi.org/10.5067/5NHC22T9375G (McNally, 2018).

Earth System Science Data↗

USGS2022

Maize yield forecasts for Sub-Saharan Africa using Earth Observation data and machine learning

Food insecurity continues to grow in Sub-Saharan Africa (SSA). In 2019, chronically malnourished people numbered nearly 240 million, or 20% of the population in SSA. Globally, numerous efforts have been made to anticipate potential droughts, crop conditions, and food shortages in order to improve early warning and risk management for food insecurity. To support this goal, we develop an Earth Observation (EO) and machine-learning-based operational, subnational maize yield forecast system and evaluate its out-of-sample forecast skills during the growing seasons for Kenya, Somalia, Malawi, and Burkina Faso. In general, forecast skills improve substantially during the vegetative growth period (VP) and gradually during the reproductive development period (RP). Thus, mid-season assessment can provide effective early warning months before harvest. Skillful forecasts (Nash Sutcliffe Efficiency (NSE) > 0.6 and Mean Absolute Percentage Error (MAPE) < 20%) appear approximately two dekads after the VP; for example, skillful forecasts appear in May in Kenya and Somalia, January in Malawi, and July in Burkina Faso. During model development, effective EO features are also identified, such as precipitation and available water during VP, and dry days and extreme temperatures in early VP. Compared to monthly standard EO features, sub-monthly (dekadal), non-standard, and serial EO features significantly improve forecast skills by ＋ 0.3 NSE and -10% of MAPE, demonstrating the ability to precisely and effectively capture favorable or detrimental crop development conditions. Finally, skillful forecasts and practical utility are demonstrated in the recent normal and dry years in each region. Overall, the developed yield forecasting system can provide skillful predictions during the growing season, supporting regional and international agricultural decision-making processes, including informing food-security planning and management, thereby helping to mitigate food shortages caused by unfavorable climate conditions.

Global Food Security↗

USGS2021

Vegetation monitoring optimization with normalized difference vegetation index and evapotranspiration using remote sensing measurements and land surface models over East Africa

The majority of people in East Africa rely on the agro-pastoral system for their livelihood, which is highly vulnerable to droughts and flooding. Agro-pastoral droughts are endemic to the region and are considered the main natural hazard that contributes to food insecurity. Drought begins with rainfall deficit, gradually leading to soil moisture deficit, higher land surface temperature, and finally impacts to vegetation growth. Therefore, monitoring vegetation conditions is essential in understanding the progression of drought, potential effects on food security, and providing early warning information needed for drought mitigation decisions. Because vegetation processes couple the land and atmosphere, monitoring of vegetation conditions requires consideration of both water provision and demand. While there is consensus in using either the Normalized Difference Vegetation Index (NDVI) or evapotranspiration (ET) for vegetation monitoring, a comprehensive assessment optimizing the use of both has not yet been done. Moreover, the evaluation methods for understanding the relationships between NDVI and ET for vegetation monitoring are also limited. Taking these gaps into account we have developed a framework to optimize vegetation monitoring using both NDVI and ET by identifying where they perform the best by using triple collocation and cross-correlation methods. We estimated the random error structure in Moderate Resolution Imaging Spectroradiometer (MODIS) NDVI; ET from the Operational Simplified Surface Energy Balance (SSEBop) model; and ET from land surface models (LSMs). LSM ET and SSEBop ET have been found to be better indicators for vegetation monitoring during extreme drought events, while NDVI could provide better information on vegetation condition during wetter than normal conditions. The random error structures of these variables suggest that LSM ET is most likely to provide important information for vegetation monitoring over low and high ends of the vegetation fraction areas. Over moderate vegetative areas, any of these variables could provide important vegetation information for drought characterization and food security assessments. While this study provides a framework for optimizing vegetation monitoring for drought and food security assessments over East Africa, the framework can be adopted to optimize vegetation monitoring over any other drought and food insecure region of the world.

Frontiers in Climate↗

USGS2020

Algorithm and data improvements for version 2.1 of the Climate Hazards center’s InfraRed Precipitation with Stations Data Set

To support global drought early warning, the Climate Hazards Center (CHC) at the University of California, Santa Barbara developed the Climate Hazards center InfraRed Precipitation with Stations (CHIRPS) dataset, in collaboration with the US Geological Survey and NASA SERVIR. Specifically designed to support early warning applications, CHIRPS has high a spatial resolution (0.05°), a long period of record (1981 to the near present), and relatively low latencies. Here we will describe a brief formal analysis of distributional bias in CHIRPS2.0. This analysis reveals, as expected, that CHIRPS2.0 means are very similar to observed station data. However, a closer look suggests that low precipitation values are underestimated and high values are over-estimated in the CHIRPS2.0. We describe a potential correction for this below.

Book chapter↗

USGS2020

The NASA hydrological forecast system for food and water security applications

Many regions in Africa and the Middle East are vulnerable to drought and to water and food insecurity, motivating agency efforts such as the U.S. Agency for International Development’s (USAID) Famine Early Warning System Network (FEWS NET) to provide early warning of drought events in the region. Each year these warnings guide life-saving assistance that reaches millions of people. A new NASA multi-model, remote sensing-based hydrological forecasting and analysis system, NHyFAS, has been developed to support such efforts by improving the FEWS NET’s current early warning capabilities. NHyFAS derives its skill from two sources: (i) accurate initial conditions, as produced by an offline land modeling system through the application and/or assimilation of various satellite data (precipitation, soil moisture, and terrestrial water storage); and (ii) meteorological forcing data during the forecast period as produced by a state-of-the-art ocean-land-atmosphere forecast system. The land modeling framework used is the Land Information System (LIS), which employs a suite of land surface models, allowing multi-model ensembles and multiple data assimilation strategies to better estimate land surface conditions. An evaluation of NHyFAS shows that its one-to-five month forecasts successfully capture known historic drought events. The system also benefits from strong collaboration with end-user partners in Africa and the Middle East, who provide insights on strategies to formulate and communicate early warning indicators to water and food security communities. The additional lead time provided by this system will increase the speed, accuracy and efficacy of humanitarian disaster relief, helping to save lives and livelihoods.

Bulletin of the American Meteorological Society↗

USGS2019

Using out-of-sample yield forecast experiments to evaluate which earth observation products best indicate end of season maize yields

In East Africa, accurate grain yield predictions can help save lives and protect livelihoods. Regional grain yield forecasts can inform decisions regarding the availability and prices of key staples, food aid, and large humanitarian responses. Here, we use earth observation (EO) products to develop and evaluate subnational grain yield forecasts for 56 regions located in two severely food insecure countries: Kenya and Somalia. We identify, for a given region and time of year, which, if any, product is the best indicator for end-of-season maize yields. Our analysis seeks to inform a real-world situation in which analysts have access to multiple regularly updated EO data products, but predictive skill corresponding to each may vary across these regions and throughout the season. We find that the most accurate predictions can be made for high-producing areas, but that the relationship between production and forecast accuracy diminishes in areas with yields averaging greater than one metric ton per hectare. However, while forecast accuracy is highest in high production areas, in many of these regions, the forecast accuracy of models using EO products is not better than a set of baseline models that do not use EO products. Overall, we find that rainfall is the best indicator in low-producing regions and that other EO products work best in areas where yields are relatively consistent, but production is still limited by environmental factors.

Environmental Research Letters↗

USGS2019

Pacific sea surface temperature linkages with Tanzania’s multi-season drying trends

Droughts in Tanzania pose challenges to agriculture, water resources, and hydropower production, all of which impact livelihoods. Tanzania experienced below average precipitation during 1999-2014 during two important seasons: December to February (DJF) in the south and during March to June (MAMJ) in the northeast. We explore DJF and MAMJ precipitation in the areas with drying trends and examine their relationships with anomalous sea surface temperatures (SST) in the Indo-Pacific and corresponding circulation patterns. It is found that at seasonal time scales, precipitation in DJF and MAMJ trend areas appears inversely related to diabatic forcing in the equatorial Pacific. The dominant influence for droughts in DJF is from eastern Pacific SST while for droughts in MAMJ it is from West Pacific SST. A bivariate regression model with West Pacific and Niño3.4 region SST as predictors is found to recreate multidecadal DJF variability after the 1950s and the extreme drying in MAMJ during the 2000s. The regression model coefficients also indicate differential eastern vs. western Pacific forcing for DJF vs. MAMJ. Thus we suggest that recent La Niña-like conditions, characterized by an enhanced Pacific SST gradient due to cooling in the eastern Pacific and warming in the western Pacific, played a substantial role in Tanzania’s recent multi-season drying trends. SST change scenarios (difference between 2023-2037 and 2000-2014 means) based on CMIP5 projections and observed trends illustrate the uncertainty about future precipitation outcomes and also the potential implications of contrasting linkages to eastern vs. western Pacific SSTs. These scenarios are mainly optimistic for the DJF southern Tanzania trend area, because it appears dominated by Niño3.4 cooling at both seasonal and decadal time scales. Conversely, our scenarios are quite pessimistic for the MAMJ northeastern Tanzania trend area, because we find a dominant negative influence of warming West Pacific SST.

International Journal of Climate Change: Impacts a↗

USGS2017

A land data assimilation system for sub-Saharan Africa food and water security applications

Seasonal agricultural drought monitoring systems, which rely on satellite remote sensing and land surface models (LSMs), are important for disaster risk reduction and famine early warning. These systems require the best available weather inputs, as well as a long-term historical record to contextualize current observations. This article introduces the Famine Early Warning Systems Network (FEWS NET) Land Data Assimilation System (FLDAS), a custom instance of the NASA Land Information System (LIS) framework. The FLDAS is routinely used to produce multi-model and multi-forcing estimates of hydro-climate states and fluxes over semi-arid, food insecure regions of Africa. These modeled data and derived products, like soil moisture percentiles and water availability, were designed and are currently used to complement FEWS NET’s operational remotely sensed rainfall, evapotranspiration, and vegetation observations. The 30+ years of monthly outputs from the FLDAS simulations are publicly available from the NASA Goddard Earth Science Data and Information Services Center (GES DISC) and recommended for use in hydroclimate studies, early warning applications, and by agro-meteorological scientists in Eastern, Southern, and Western Africa.

Scientific Data↗

USGS2015

Calculating crop water requirement satisfaction in the West Africa Sahel with remotely sensed soil moisture

The Soil Moisture Active Passive (SMAP) mission will provide soil moisture data with unprecedented accuracy, resolution, and coverage, enabling models to better track agricultural drought and estimate yields. In turn, this information can be used to shape policy related to food and water from commodity markets to humanitarian relief efforts. New data alone, however, do not translate to improvements in drought and yield forecasts. New tools will be needed to transform SMAP data into agriculturally meaningful products. The objective of this study is to evaluate the possibility and efficiency of replacing the rainfall-derived soil moisture component of a crop water stress index with SMAP data. The approach is demonstrated with 0.1°-resolution, ~10-day microwave soil moisture from the European Space Agency and simulated soil moisture from the Famine Early Warning Systems Network Land Data Assimilation System. Over a West Africa domain, the approach is evaluated by comparing the different soil moisture estimates and their resulting Water Requirement Satisfaction Index values from 2000 to 2010. This study highlights how the ensemble of indices performs during wet versus dry years, over different land-cover types, and the correlation with national-level millet yields. The new approach is a feasible and useful way to quantitatively assess how satellite-derived rainfall and soil moisture track agricultural water deficits. Given the importance of soil moisture in many applications, ranging from agriculture to public health to fire, this study should inspire other modeling communities to reformulate existing tools to take advantage of SMAP data.

Journal of Hydrometeorology↗

USGS2015

Mapping the distribution of malaria: current approaches and future directions

Mapping the distribution of malaria has received substantial attention because the disease is a major source of illness and mortality in humans, especially in developing countries. It also has a defined temporal and spatial distribution. The distribution of malaria is most influenced by its mosquito vector, which is sensitive to extrinsic environmental factors such as rainfall and temperature. Temperature also affects the development rate of the malaria parasite in the mosquito. Here, we review the range of approaches used to model the distribution of malaria, from spatially explicit to implicit, mechanistic to correlative. Although current methods have significantly improved our understanding of the factors influencing malaria transmission, significant gaps remain, particularly in incorporating nonlinear responses to temperature and temperature variability. We highlight new methods to tackle these gaps and to integrate new data with models.

Book chapter↗

USGS2015

Mapping physiological suitability limits for malaria in Africa under climate change

We mapped current and future temperature suitability for malaria transmission in Africa using a published model that incorporates nonlinear physiological responses to temperature of the mosquito vector Anopheles gambiae and the malaria parasite Plasmodium falciparum . We found that a larger area of Africa currently experiences the ideal temperature for transmission than previously supposed. Under future climate projections, we predicted a modest increase in the overall area suitable for malaria transmission, but a net decrease in the most suitable area. Combined with human population density projections, our maps suggest that areas with temperatures suitable for year-round, highest-risk transmission will shift from coastal West Africa to the Albertine Rift between the Democratic Republic of Congo and Uganda, whereas areas with seasonal transmission suitability will shift toward sub-Saharan coastal areas. Mapping temperature suitability places important bounds on malaria transmissibility and, along with local level demographic, socioeconomic, and ecological factors, can indicate where resources may be best spent on malaria control.

Vector-Borne and Zoonotic Diseases↗

USGS2015

Understanding uncertainty in temperature effects on vector-borne disease: a Bayesian approach

Extrinsic environmental factors influence the distribution and population dynamics of many organisms, including insects that are of concern for human health and agriculture. This is particularly true for vector-borne infectious diseases like malaria, which is a major source of morbidity and mortality in humans. Understanding the mechanistic links between environment and population processes for these diseases is key to predicting the consequences of climate change on transmission and for developing effective interventions. An important measure of the intensity of disease transmission is the reproductive number R 0 . However, understanding the mechanisms linking R 0 and temperature, an environmental factor driving disease risk, can be challenging because the data available for parameterization are often poor. To address this, we show how a Bayesian approach can help identify critical uncertainties in components of R 0 and how this uncertainty is propagated into the estimate of R 0 . Most notably, we find that different parameters dominate the uncertainty at different temperature regimes: bite rate from 15°C to 25°C; fecundity across all temperatures, but especially ~25–32°C; mortality from 20°C to 30°C; parasite development rate at ~15–16°C and again at ~33–35°C. Focusing empirical studies on these parameters and corresponding temperature ranges would be the most efficient way to improve estimates of R 0 . While we focus on malaria, our methods apply to improving process-based models more generally, including epidemiological, physiological niche, and species distribution models.

Ecology↗

USGS2014

A seasonal agricultural drought forecast system for food-insecure regions of East Africa

The increasing food and water demands of East Africa's growing population are stressing the region's inconsistent water resources and rain-fed agriculture. More accurate seasonal agricultural drought forecasts for this region can inform better water and agricultural management decisions, support optimal allocation of the region's water resources, and mitigate socio-economic losses incurred by droughts and floods. Here we describe the development and implementation of a seasonal agricultural drought forecast system for East Africa (EA) that provides decision support for the Famine Early Warning Systems Network's science team. We evaluate this forecast system for a region of equatorial EA (2° S to 8° N, and 36° to 46° E) for the March-April-May growing season. This domain encompasses one of the most food insecure, climatically variable and socio-economically vulnerable regions in EA, and potentially the world: this region has experienced famine as recently as 2011. To assess the agricultural outlook for the upcoming season our forecast system simulates soil moisture (SM) scenarios using the Variable Infiltration Capacity (VIC) hydrologic model forced with climate scenarios for the upcoming season. First, to show that the VIC model is appropriate for this application we forced the model with high quality atmospheric observations and found that the resulting SM values were consistent with the Food and Agriculture Organization's (FAO's) Water Requirement Satisfaction Index (WRSI), an index used by FEWS NET to estimate crop yields. Next we tested our forecasting system with hindcast runs (1993–2012). We found that initializing SM forecasts with start-of-season (5 March) SM conditions resulted in useful SM forecast skill (> 0.5 correlation) at 1-month, and in some cases at 3 month lead times. Similarly, when the forecast was initialized with mid-season (i.e. 5 April) SM conditions the skill until the end-of-season improved. This shows that early-season rainfall is critical for end-of-season outcomes. Finally we show that, in terms of forecasting spatial patterns of SM anomalies, the skill of this agricultural drought forecast system is generally greater (> 0.8 correlation) during drought years. This means that this system might be particularity useful for identifying the events that present the greatest risk to the region.

Hydrology and Earth System Sciences↗

USGS2012

Optimal temperature for malaria transmission is dramaticallylower than previously predicted

The ecology of mosquito vectors and malaria parasites affect the incidence, seasonal transmission and geographical range of malaria. Most malaria models to date assume constant or linear responses of mosquito and parasite life-history traits to temperature, predicting optimal transmission at 31 °C. These models are at odds with field observations of transmission dating back nearly a century. We build a model with more realistic ecological assumptions about the thermal physiology of insects. Our model, which includes empirically derived nonlinear thermal responses, predicts optimal malaria transmission at 25 °C (6 °C lower than previous models). Moreover, the model predicts that transmission decreases dramatically at temperatures > 28 °C, altering predictions about how climate change will affect malaria. A large data set on malaria transmission risk in Africa validates both the 25 °C optimum and the decline above 28 °C. Using these more accurate nonlinear thermal-response models will aid in understanding the effects of current and future temperature regimes on disease transmission.

Ecology Letters↗