Geology topics

Amanda J. Warlick

Publications and source records attributed to Amanda J. Warlick.

5 recordsLinked to original sources

USGS2025

Evaluating mark–resight survey design performance using simulation: A case study of endangered Steller sea lions

Effective monitoring is fundamental to estimating wildlife population parameters with a level of accuracy and precision that is adequate to inform management decisions. However, managers must balance trade-offs between the costs of monitoring and the resulting data quality to identify cost-effective monitoring survey designs. As such, evaluating the expected performance of monitoring surveys relative to monitoring objectives prior to survey implementation is critical. In this study, we present a simulation framework for examining the accuracy and precision of age-specific survival estimates and the probability of detecting a change in survival within the context of mark–resight monitoring programs. We consider 90 survey designs that vary across marked cohort size, marking frequency, study duration, and resight probability (i.e., detection of marked individuals). We apply this approach to the design of a monitoring program for Steller sea lions ( Eumetopias jubatus ), which is complicated by heterogeneity in rookery accessibility, population sizes, and abundance trends across the species' range. To identify cost-effective survey designs in the absence of actual survey costs, we evaluated performance with respect to a relative-costs schema. Our results highlight survey designs that reliably meet pre-defined precision targets, with precision and accuracy strongly affected by marked cohort size, marking frequency, and study duration. We found that historical mark–resight survey effort for Steller sea lions has been sufficient to reliably achieve precision targets for younger age class survival probabilities only for rookeries where abundance has been stable or increasing. In contrast, the probability of achieving survival estimates with target levels of precision at rookeries where abundance has been declining is low (<25%) due to smaller marked cohort sizes, less frequent marking at remote sites, and fewer years of available data. Our results indicate that the precision of survival estimates for subpopulations of conservation concern can be improved by longer-term monitoring, although the constraints of monitoring small populations may limit the ability of biologists to detect changes in population dynamics on management-relevant time horizons. Our survey design evaluation framework can be applied in a variety of contexts to assist natural resource managers in developing cost-effective monitoring programs.

Alaska, California, Oregon↗

USGS2023

Identifying demographic and environmental drivers of population dynamics and viability in an endangered top predator using an integrated model

Knowledge about the demographic and environmental factors underlying population dynamics is fundamental to designing effective conservation measures to recover depleted wildlife populations. However, sparse monitoring data or persistent knowledge gaps about threats make it difficult to identify the drivers of population dynamics. In situations where small, declining, or depleted populations show continued evidence of decline for unknown reasons, integrated population models can make efficient use of available data to improve our understanding of demography, provide fundamental insights into factors that may be limiting recovery, and support conservation decisions. We used mark-resight and aerial survey data from 2004 to 2018 to build a Bayesian integrated population model for the Cook Inlet population of beluga whales ( Delphinapterus leucas ), which is listed as endangered under the U.S. Endangered Species Act. We examined the effects of prey availability and oceanographic conditions on beluga vital rates and conducted a population viability analysis to predict extinction risk across a range of hypothetical changes in beluga survival and reproduction. Our results indicated that while the survival of breeding females (0.97; 95% CI: 0.95–0.99) and young calves (0.92; 0.80–0.98) was relatively high, the survival of nonbreeders (0.94; 0.91–0.97) and fecundity (0.28; 0.22–0.36) may be depressed. Furthermore, our analysis indicates that the population will likely continue to decline, with a 17–32% probability of extinction in 150 years. Our model highlights the utility of integrated population modeling for maximizing the usefulness of available data and identifying factors contributing to the failure of protected populations to recover. This framework can be used to evaluate proposed conservation and recovery efforts for this and other endangered species.

Animal Conservation↗

USGS2023

Examining the effect of environmental variability on the viability of endangered Steller sea lions using an integrated population model

Understanding spatio-temporal variability in demography and the influence of environmental conditions offers insight into the factors underlying population dynamics. This is particularly true for species with divergent demographic patterns across large geographic areas. The contrasting abundance trends observed across the range of Steller sea lions (Eumetopias jubatus) have been studied extensively, with research suggesting that the primary drivers of localized population dynamics vary over time and space. We developed a Bayesian integrated population model for the endangered western distinct population segment of Steller sea lions that combines mark-recapture and count data from 2000-2021 to estimate demographic rates, abundance trends, and the effects of environmental variability on population growth. Our results highlight subregional demographic differences, including reduced pup survival in the central Aleutian Islands and reduced yearling survival west of Samalga Pass. Range-wide abundance increased by 1.7% yr-1 (95% credible interval: 0.14; 3.4%) over the study period, with a positive annual growth rate of 3.0% (1.1; 5.1%) yr-1 east of Samalga Pass, a negative growth rate of -2.1% (-4.6; 0.5%) yr-1 west of Samalga Pass, and an overall low probability of local extirpation (<2%) in 100 years even in subregions experiencing continued decline. The effect of environmental variability on population growth varied depending on subpopulation size and vital rates and was strongest in the area of greatest decline. Our model improves upon existing approaches for estimating abundance, accounts for environmental variability within the viability analysis, and can facilitate evaluating the efficacy of conservation actions and progress toward recovery goals.

Alaska↗

USGS2022

Environmental drivers of demography and potential factors limiting the recovery of an endangered marine top predator

Understanding what drives changes in wildlife demography is fundamental to the conservation and management of depleted or declining populations, though making inference about the intrinsic and extrinsic factors that influence survival and reproduction remains challenging. Here we use mark–resight data from 2000 to 2018 to examine the effects of environmental variability on age-specific survival and natality for the endangered western distinct population segment (wDPS) of Steller sea lions ( Eumetopias jubatus ) in Alaska, USA. Though this population has been studied extensively over the last four decades, the causes of divergent abundance trends that have been observed across the wDPS range remain unknown. We developed a Bayesian multievent mark–resight model that accounts for female reproductive state uncertainty. Annual survival probabilities for male pups (0.44; 0.36–0.53), female yearlings (0.63; 0.49–0.73), and male yearlings (0.62; 0.51–0.71) born in the western portion of the wDPS range, estimated here for the first time, were lower than those in the eastern portion of the wDPS range, estimated as: male pups (0.69; 0.65–0.74), female yearlings (0.76; 0.71–0.81), and male yearlings (0.71; 0.65–0.78). There was a higher proportion of young female breeders in the western portion of the range, but overall natality was lower (0.69; 0.47–0.96) than in the eastern portion of the range (0.80; 0.74–0.84). Additionally, pup mass had a positive effect on pup survival in the eastern portion of the range and a negative effect in the western portion of the range, potentially due to earlier weaning of heavier pups. Local- and basin-scale oceanographic features such as the Aleutian Low, the Arctic Oscillation Index, the North Pacific Gyre Oscillation, chlorophyll concentration, upwelling, and wind in certain seasons were correlated with vital rates. However, drawing strong inferences from these correlations is challenging given that relationships between ocean conditions and an adaptive top predator in a dynamic ecosystem are exceedingly complex. This study provides the first demographic rate estimates for the western portion of the range where abundance estimates continue to decline. These results will advance efforts to identify factors driving regionally divergent abundance trends, with implications for population-level responses to future climate variability.

Alaska↗

USGS2022

Estimating reproductive and juvenile survival rates when offspring ages are uncertain: A novel multievent mark-resight model with beluga whale case study

Understanding the survival and reproductive rates of a population is critical to determining its long-term dynamics and viability. Mark-resight models are often used to estimate these demographic rates, but estimation of survival and reproductive rates is challenging, especially for wide-ranging, patchily distributed, or cryptic species. In particular, existing mark-resight models cannot accommodate data from populations in which offspring remain with parents for multiple years, are not always detected, and cannot be aged with certainty. Here we describe a Bayesian multievent mark-resight modelling framework that uses all available adult and adult-offspring sightings (including sightings with older offspring of uncertain age) to estimate reproductive rates and survival rates of adults and juveniles. We extend existing multievent mark-resight models that typically only incorporate adult breeding state uncertainty by additionally accounting for age uncertainty in unmarked offspring and uncertainty in the duration of the mother-offspring association. We describe our model in general terms and with a simple illustrative example, then apply it in a more complex empirical setting using 13 years of photo-ID data from a critically endangered population of beluga whales Delphinapterus leucas . We evaluated model performance using simulated data under a range of sample sizes, and adult and offspring detection rates. Applying our model to the beluga data yielded precise estimates for all demographic rates of interest (despite substantial uncertainty in calf ages), including nonbreeder survival and reproductive rates lower than in other beluga populations. Simulations suggested our model yields asymptotically unbiased parameter estimates with good precision and low bias even with moderate sample sizes and detection rates. This work represents an important new development in multievent mark-resight modelling, allowing estimation of reproductive and juvenile survival rates for populations with extended adult—offspring associations and uncertain offspring ages (e.g. some marine mammals, elephants, bears, great apes, bats and birds). Our model facilitated estimation of robust demographic rates for an endangered beluga population that were previously inestimable (e.g. nonbreeder and juvenile survival, reproductive rate) and that will yield new insights into this population's continued decline.

Methods in Ecology and Evolution↗