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Geology topics

Alexander J. Smith

Publications and source records attributed to Alexander J. Smith.

11 recordsLinked to original sources

Microtopographic variation as a potential early indicator of ecosystem state change and vulnerability in salt marshes

As global climate change alters the magnitude and rates of environmental stressors, predicting the extent of ecosystem degradation driven by these rapidly changing conditions becomes increasingly urgent. At the landscape scale, disturbances and stressors can increase spatial variability and heterogeneity — indicators that can serve as potential early warnings of declining ecosystem resilience. Increased spatial variability in salt marshes at the landscape scale has been used to quantify the propagation of ponding in salt marsh interiors, but ponding at the landscape scale follows a state change rather than predicts it. Here, we suggest a novel application of commonly collected surface elevation table (SET) data and explore millimeter-scale marsh surface microtopography as a potential early indicator of ecosystem transition. We find an increase in spatial variability using multiple metrics of microtopographic heterogeneity in vulnerable salt marsh communities across the North American Atlantic seaboard. Increasing microtopographic heterogeneity in vulnerable salt marshes mirrored increasing trends in variance when a tipping point is approached in other alternative stable state systems — indicating that early warning signals of marsh drowning and ecosystem transition are observable at small-spatial scales prior to runaway ecosystem degradation. Congruence between traditional and novel metrics of marsh vulnerability suggests that microtopographic metrics can be used to identify hidden vulnerability before widespread marsh degradation. This novel analysis can be easily applied to existing SET records expanding the traditional focus on vertical change to additionally encapsulate lateral processes.

Atlantic Coast

Climate-driven tradeoffs between landscape connectivity and the maintenance of the coastal carbon sink

Ecosystem connectivity tends to increase the resilience and function of ecosystems responding to stressors. Coastal ecosystems sequester disproportionately large amounts of carbon, but rapid exchange of water, nutrients, and sediment makes them vulnerable to sea level rise and coastal erosion. Individual components of the coastal landscape (i.e., marsh, forest, bay) have contrasting responses to sea level rise, making it difficult to forecast the response of the integrated coastal carbon sink. Here we couple a spatially-explicit geomorphic model with a point-based carbon accumulation model, and show that landscape connectivity, in-situ carbon accumulation rates, and the size of the landscape-scale coastal carbon stock all peak at intermediate sea level rise rates despite divergent responses of individual components. Progressive loss of forest biomass under increasing sea level rise leads to a shift from a system dominated by forest biomass carbon towards one dominated by marsh soil carbon that is maintained by substantial recycling of organic carbon between marshes and bays. These results suggest that climate change strengthens connectivity between adjacent coastal ecosystems, but with tradeoffs that include a shift towards more labile carbon, smaller marsh and forest extents, and the accumulation of carbon in portions of the landscape more vulnerable to sea level rise and erosion.

Nature Communications

Temperature optimum for marsh resilience and carbon accumulation revealed in a whole ecosystem warming experiment

Coastal marshes are globally important, carbon dense ecosystems simultaneously maintained and threatened by sea-level rise. Warming temperatures may increase wetland plant productivity and organic matter accumulation, but temperature-modulated feedbacks between productivity and decomposition make it difficult to assess how wetlands and their thick, organic rich soils will respond to climate warming. Here, we actively increased aboveground plant-surface and below-ground soil temperatures in two marsh plant communities, and found that a moderate amount of warming (1.7°C above ambient temperatures) consistently maximized root growth, marsh elevation gain, and below-ground carbon accumulation. Marsh elevation loss observed at higher temperatures was associated with increased carbon mineralization and increased microtopographic heterogeneity, a potential early warning signal of marsh drowning. Maximized elevation and below-ground carbon accumulation for moderate warming scenarios uniquely suggest linkages between metabolic theory of individuals and landscape-scale ecosystem resilience and function, but our work indicates nonpermanent benefits as global temperatures continue to rise.

Global Change Biology

Condition of macroinvertebrate communities in the Buffalo River Area of Concern following sediment remediation

The lower 10 km of the Buffalo River, a tributary to Lake Erie, was designated as an Area of Concern (AOC) in 1987 through the Great Lakes Water Quality Agreement because sediment contamination and habitat alteration from past industrialization caused several Beneficial Use Impairments (BUIs). Extensive remediation efforts conducted between 2011 and 2015 removed approximately 688,100 cubic meters of contaminated sediment from the Buffalo River AOC, and subsequent chemical analysis of sediments indicated that most remedial goals had been achieved. Benthic macroinvertebrate communities and sediment toxicity were evaluated in the AOC and an upstream reference area in 2017 and 2020 to determine whether remediation has improved benthic conditions sufficiently that the benthos BUI designation can be removed. Community condition was characterized using the New York State multi-metric index of biological integrity and bed sediments were used for 10-day toxicity tests with Chironomus dilutus and Hyalella azteca . Macroinvertebrate communities were classified as moderately to slightly impacted at most AOC sites compared to slightly impacted at most reference sites, but toxicity tests did not identify any evidence of toxicity in sediments from the AOC. A linear mixed effects model indicated that total organic carbon concentration in sediments, distance upstream from the river mouth, and the relative dominance of zebra mussels Dreissena polymorpha were the primary predictors of macroinvertebrate community condition. These findings are consistent with those from other AOCs in New York which indicate that contemporary benthic communities are generally shaped by legacy habitat alterations rather than AOC-specific sediment contamination and toxicity.

New York

Resilience of benthic macroinvertebrates to extreme floods in a Catskill Mountain river, New York, USA: Implications for water quality monitoring and assessment

Changes in the timing, magnitude, frequency, and duration of extreme hydrologic events are becoming apparent and could disrupt species assemblages and stream ecosystems across the Northeastern United States. Between August 28 and 29 of 2011, an average of 31 cm of rain from Tropical Storm Irene fell across Eastern New York State in less than 24 h and caused historic flooding in numerous streams of the Catskill Mountain Region. Peak discharges exceeded the 0.01 annual exceedance probability (> 100 year flood) in many Catskill Mountain streams. Approximately one week later, the remnants of Tropical Storm Lee deposited another 19 cm of rain onto saturated soils and caused additional flooding. Data from annual benthic macroinvertebrate surveys completed at 5 sites in the Upper Esopus Creek, a premier trout stream in the region, during August 2009–2011 (before the floods) were compared to data collected from the same sites in September 2011, November 2011, March 2012 and August 2012 (after the floods). The impact, rate of recovery and the factors which might affect the resilience of benthic macroinvertebrate communities were evaluated. The results of biological water quality assessment metrics immediately after the floods resembled those of highly polluted waters, yet severe floods were the only disturbance. Prior to the floods, standard biological assessment metrics showed that communities were not impacted and water quality was pristine. A large decrease in macroinvertebrate density was evident in the September 2011 surveys following the floods and bioassessment metrics reflected highly degraded water quality conditions. Most community metrics rebounded in 3–7 months (November 2011 and March 2012), and full recovery was evident in 12 months (August 2012) which suggests that macroinvertebrate assemblages are relatively resilient to the effects of extreme floods in these low-order streams. Therefore, macroinvertebrate samples collected from a flood-impacted stream before full recovery occurs might reflect loss of diversity and abundance from the flood disturbance and incorrectly attribute the impact to impaired water quality. The strong short-term impacts and the relatively rapid recovery of macroinvertebrate communities following catastrophic floods have important ramifications for routine bioassessment programs considering changing hydrologic regimes in streams across the Northeast and elsewhere.

New York

Effects of extreme floods on macroinvertebrate assemblages in tributaries to the Mohawk River, New York, USA

Climate change is forecast to bring more frequent and intense precipitation to New York which has motivated research into the effects of floods on stream ecosystems. Macroinvertebrate assemblages were sampled at 13 sites in the Mohawk River basin during August 2011, and again in October 2011, following historic floods caused by remnants of Hurricane Irene and Tropical Storm Lee. The annual exceedance probabilities of floods at regional flow-monitoring sites ranged from 0.5 to 0.001. Data from the first 2 surveys, and from additional surveys done during July and October 2014, were assessed to characterize the severity of flood impacts, effect of seasonality, and recovery. Indices of total taxa richness; Ephemeroptera, Plecoptera, and Trichoptera (EPT) richness; Hilsenhoff's biotic index; per cent model affinity; and nutrient biotic index-phosphorus were combined to calculate New York State Biological Assessment Profile scores. Analysis of variance tests were used to determine if the Biological Assessment Profile, its component metrics, relative abundance, and diversity differed significantly ( p ≤ .05) among the four surveys. Only total taxa richness and Shannon–Wiener diversity increased significantly, and abundance decreased significantly, following the floods. No metrics differed significantly between the July and August 2014 surveys which indicates that the differences denoted between the August and October 2011 surveys were caused by the floods. Changes in taxa richness, EPT richness, and diversity were significantly correlated with flood annual exceedance probabilities. This study increased our understanding of the resistance and resilience of benthic macroinvertebrate communities by showing that their assemblages were relatively impervious to extreme floods across the region.

New York

Assessing condition of macroinvertebrate communities and bed sediment toxicity in the Rochester Embayment Area of Concern, New York, USA

The United States and Canada agreed to restore the chemical, physical, and biological integrity of the Great Lakes ecosystem under the first Great Lakes Water Quality Agreement in 1972. The lowest reach of the Genesee River and the Rochester Embayment on Lake Ontario between Bogus Point and Nine Mile Point, including Braddock Bay, were designated as an Area of Concern (AOC) due to effects of contaminated sediments and physical disturbance on several beneficial uses. Following sediment remedial efforts and with conditions improving in the AOC, the present study was conducted to reevaluate the status of the benthic macroinvertebrate (benthos) beneficial use impairment (BUI). Benthic macroinvertebrate community assessments and 10-day Chironomus dilutus bioassays were used to test the hypotheses that sediments within the AOC were no more toxic than sediments from surrounding reference areas. The study was separated into three discrete systems (Genesee River, Lake Ontario, and Braddock Bay) and non-parametric analyses determined that a multimetric index of benthic macroinvertebrate community integrity was significantly higher at AOC sites compared to reference sites on the Genesee River and in Braddock Bay while AOC and reference sites on Lake Ontario did not differ significantly. Survival and growth of C. dilutus were also similar between AOC and reference sites for each system with the exception of significantly higher growth at reference sites on Lake Ontario. Results generally indicated that the condition of benthos and toxicity of sediment of the Rochester Embayment AOC are similar to or better than that in the surrounding area.

New York

Influence of manatees' diving on their risk of collision with watercraft

Watercraft pose a threat to endangered Florida manatees ( Trichechus manatus latirostris ). Mortality from watercraft collisions has adversely impacted the manatee population&rsquo;s growth rate, therefore reducing this threat is an important management goal. To assess factors that contribute to the risk of watercraft strikes to manatees, we studied the diving behavior of nine manatees carrying GPS tags and time&ndash;depth recorders in Tampa Bay, Florida, during winters 2002&ndash;2006. We applied a Bayesian formulation of generalized linear mixed models to depth data to model the probability ( P t ) that manatees would be no deeper than 1.25 m from the water&rsquo;s surface as a function of behavioral and habitat covariates. Manatees above this threshold were considered to be within striking depth of a watercraft. Seventy-eight percent of depth records (individual range 62&ndash;86%) were within striking depth (mean = 1.09 m, max = 16.20 m), illustrating how vulnerable manatees are to strikes. In some circumstances manatees made consecutive dives to the bottom while traveling, even in areas >14 m, possibly to conserve energy. This is the first documentation of potential cost-efficient diving behavior in manatees. Manatees were at higher risk of being within striking depth in shallow water (<0.91 m), over seagrass, at night, and while stationary or moving slowly; they were less likely to be within striking depth when &le;50 m from a charted waterway. In shallow water the probability of a manatee being within striking depth was 0.96 (CI = 0.93&ndash;0.98) and decreased as water depth increased. The probability was greater over seagrass ( P t = 0.96, CI = 0.93&ndash;0.98) than over other substrates ( P t = 0.73, CI = 0.58&ndash;0.84). Quantitative approaches to assessing risk can improve the effectiveness of manatee conservation measures by helping identify areas for protection.

Florida

Toxicity of waters from the Rochester Embayment Area of Concern to the plankton species Pseudokirchneriella subcapitata and Ceriodaphnia dubia

The lower Genesee River and Rochester Embayment of Lake Ontario are a designated Area of Concern (AOC) under the binational Great Lakes Water Quality Agreement. The &ldquo;degradation of phytoplankton and zooplankton populations&rdquo; or plankton Beneficial Use Impairment (BUI) was classified as unknown and in need of further assessment in this AOC because water quality data suggested plankton communities could be effected and community data were either unavailable or indicated impacts. The plankton BUI may now be obsolete because local contaminant sources have been largely eliminated. The present study was conducted between July 2013 and August 2014 to assess the BUI-removal criteria: &ldquo;AOC plankton bioassays confirm that toxicity in ambient waters (i.e., no growth inhibition) is not significantly higher than comparable non-AOC controls&rdquo;. Acute and chronic toxicity of waters from 13 sites were quantified seasonally using standardized bioassays with the green alga Pseudokirchneriella subcapitata and water flea Ceriodaphnia dubia to test the hypothesis that toxicity of waters from AOC sites was not higher than that of waters from comparable non-AOC reference sites. Survival and reproduction of C. dubia did not differ significantly between site types, systems, or months. The growth of P. subcapitata did not differ between site types, but differed among systems and months. All results indicate that waters from AOC sites were no more toxic to both plankton species than waters from reference sites. Assuming test species represent natural plankton assemblages, water quality should not negatively affect survival and growth of resident plankton populations in the Rochester Embayment AOC.

New York

Assessing condition of macroinvertebrate communities and sediment toxicity in the St. Lawrence River at Massena Area-of-Concern

In 1972, the USA and Canada agreed to restore the chemical, physical, and biological integrity of the Great Lakes ecosystem under the first Great Lakes Water Quality Agreement. In subsequent amendments, part of the St. Lawrence River at Massena, New York and segments of three tributaries, were designated as an Area of Concern (AOC) due to the effects of polychlorinated biphenyls (PCBs), lead and copper contamination, and habitat degradation and resulting impairment to several beneficial uses. Because sediments have been largely remediated, the present study was initiated to evaluate the current status of the benthic macroinvertebrate (benthos) beneficial use impairment (BUI). Benthic macroinvertebrate communities and sediment toxicity tests using Chironomus dilutus were used to test the hypotheses that community condition and sediment toxicity at AOC sites were not significantly different from those of adjacent reference sites. Grain size was found to be the main driver of community composition and macroinvertebrate assemblages, and bioassessment metrics did not differ significantly between AOC and reference sites of the same sediment class. Median growth of C. dilutus and its survival in three of the four river systems did not differ significantly in sediments from AOC and reference sites. Comparable macroinvertebrate assemblages and general lack of toxicity across most AOC and reference sites suggest that the quality of sediments should not significantly impair benthic macroinvertebrate communities in most sites in the St. Lawrence River AOC.

New York

Effects of extreme floods on trout populations and fish communities in a Catskill Mountain river

Summary 1. Extreme hydrologic events are becoming more common with changing climate. Although the impacts of winter and spring floods on lotic ecosystems have been well studied, the effects of summer floods are less well known. 2. The Upper Esopus Creek Basin in the Catskill Mountains, NY, experienced severe flooding from Tropical Storm Irene on 28 August 2011, and peak discharges exceeded the 0.01 annual exceedance probability (>100 year flood) in some reaches. Three years of fish community data from pre-flood surveys at nine sites were compared to data from 2 years of post-flood surveys to evaluate changes in fish communities and populations of brown trout ( Salmo trutta ) and rainbow trout ( Oncorhynchus mykiss ). 3. Basinwide, fish assemblages were not strongly impacted and appeared highly resilient to the effects of the flood. Total density and biomass of fish communities were greater at most sites 10-11 months after the flood than 1 month prior to the flood while richness and diversity were generally unchanged. Community composition did not differ significantly between years or between the pre-and post-flood periods. 4. Although the density of mature brown trout was low at most sites (mean density = 146 fish ha-1), young-of-the-year brown trout reached their highest density (mean = 2312 fish ha-1) during 2012. In contrast, rainbow trout densities declined substantially during the 5-year study and the 2012 year class was small (mean density = 222 fish ha-1). 5. Late summer floods may be less damaging to stream fish communities than winter or spring floods as spawning activity is negligible and early life stages of many species are generally larger and less susceptible to displacement and mortality. Additionally, post-flood conditions may be advantageous for brown trout recruitment.

Freshwater Biology