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A. Clark

Publications and source records attributed to A. Clark.

9 recordsLinked to original sources
USGS2018

KG²B, a collaborative benchmarking exercise for estimating the permeability of the Grimsel granodiorite - Part 1: measurements, pressure dependence and pore-fluid effects

Measuring the permeability of tight rocks remains a challenging task. In addition to the traditional sources of errors that affect more permeable formations (e.g. sample selection, non-representative specimens, disturbance introduced during sample acquisition and preparation), tight rocks can be particularly prone to solid–fluid interactions and thus more sensitive to the methods, procedures and techniques used to measure permeability. To address this problem, it is desirable to collect, for a single material, measurements obtained by different methods and pore-fluids. For that purpose a collaborative benchmarking exercise involving 24 laboratories was organized for measuring the permeability of a single low permeability material, the Grimsel granodiorite, at a common effective confining pressure (5 MPa). The objectives of the benchmark were: (i) to compare the results for a given method, (ii) to compare the results between different methods, (iii) to analyze the accuracy of each method, (iv) to study the influence of experimental conditions (especially the nature of pore fluid), (v) to discuss the relevance of indirect methods and models and finally (vi) to suggest good practice for low permeability measurements. In total 39 measurements were collected that allowed us to discuss the influence of (i) pore-fluid, (ii) measurement method, (iii) sample size and (iv) pressure sensitivity. Discarding some outliers from the bulk data set (4 out of 39) an average permeability of 1.11 × 10 −18 m² with a standard deviation of 0.57 × 10 −18 m² was obtained. The most striking result was the large difference in permeability for gas measurements compared to liquid measurements. Regardless of the method used, gas permeability was higher than liquid permeability by a factor approximately 2 ( k gas = 1.28 × 10 −18 m² compared to k liquid = 0.65 × 10 −18 m²). Possible explanations are that (i) liquid permeability was underestimated due to fluid-rock interactions (ii) gas permeability was overestimated due to insufficient correction for gas slippage and/or (iii) gases and liquids do not probe exactly the same porous networks. The analysis of Knudsen numbers shows that the gas permeability measurements were performed in conditions for which the Klinkenberg correction is sufficient. Smaller samples had a larger scatter of permeability values, suggesting that their volume were below the Representative Elementary Volume. The pressure dependence of permeability was studied by some of the participating teams in the range 1–30 MPa and could be fitted to an exponential law k = k o .exp(– γP eff ) with γ = 0.093 MPa −1 . Good practice rules for measuring permeability in tight materials are also provided.

Geophysical Journal International↗
USGS2018

KG²B, a collaborative benchmarking exercise for estimating the permeability of the Grimsel granodiorite - Part 2: modeling, microstructures and complementary data

Measuring and modelling the permeability of tight rocks remains a challenging task. In addition to the traditional sources of errors that affect more permeable formations (e.g. sample selection, non-representative specimens, disturbance introduced during sample acquisition and preparation), tight rocks can be particularly prone to solid–fluid interactions and thus more sensitive to the methods, procedures and techniques used to measure permeability. To address this problem, it is desirable to collect, for a single material, measurements obtained by different methods and pore fluids. For that purpose, a benchmarking exercise involving 24 laboratories was organized for measuring and modelling the permeability of a single low-permeability material, the Grimsel granodiorite. The objectives of the benchmark were: (i) to compare the results for a given method, (ii) to compare the results between different methods, (iii) to analyse the accuracy of each method, (iv) to study the influence of experimental conditions (especially the nature of pore fluid), (v) to discuss the relevance of indirect methods and models and finally (vi) to suggest good practice for low-permeability measurements. To complement the data set of permeability measurements presented in a companion paper, we focus here on (i) quantitative analysis of microstructures and pore size distribution, (ii) permeability modelling and (iii) complementary measurements of permeability anisotropy and poroelastic parameters. Broad ion beam—scanning electron microscopy, micro-computerized tomography, mercury injection capillary pressure (MICP) and nuclear magnetic resonance (NMR) methods were used to characterize the microstructures and provided the input parameters for permeability modelling. Several models were used: (i) basic statistical models, (ii) 3-D pore network and effective medium models, (iii) percolation model using MICP data and (iv) free-fluid model using NMR data. The models were generally successful in predicting the actual range of measured permeability. Statistical models overestimate the permeability because they do not adequately account for the heterogeneity of the crack network. Pore network and effective medium models provide additional constraints on crack parameters such as aspect ratio, aperture, density and connectivity. MICP and advanced microscopy techniques are very useful tools providing important input data for permeability estimation. Permeability measured—orthogonal to foliation is lower that—parallel to foliation. Combining the experimental and modelling results provide a unique and rich data set.

Geophysical Journal International↗
USGS2011

Evidence of two genetic clusters of manatees with low genetic diversity in Mexico and implications for their conservation

The Antillean manatee ( Trichechus manatus manatus ) occupies the tropical coastal waters of the Greater Antilles and Caribbean, extending from Mexico along Central and South America to Brazil. Historically, manatees were abundant in Mexico, but hunting during the pre-Columbian period, the Spanish colonization and throughout the history of Mexico, has resulted in the significantly reduced population occupying Mexico today. The genetic structure, using microsatellites, shows the presence of two populations in Mexico: the Gulf of Mexico (GMx) and Chetumal Bay (ChB) on the Caribbean coast, with a zone of admixture in between. Both populations show low genetic diversity (GMx: N A = 2.69; H E = 0.41 and ChB: N A = 3.0; H E = 0.46). The lower genetic diversity found in the GMx, the largest manatee population in Mexico, is probably due to a combination of a founder effect, as this is the northern range of the sub-species of T. m. manatus , and a bottleneck event. The greater genetic diversity observed along the Caribbean coast, which also has the smallest estimated number of individuals, is possibly due to manatees that come from the GMx and Belize. There is evidence to support limited or unidirectional gene flow between these two important areas. The analyses presented here also suggest minimal evidence of a handful of individual migrants possibly between Florida and Mexico. To address management issues we suggest considering two distinct genetic populations in Mexico, one along the Caribbean coast and one in the riverine systems connected to the GMx.

Coastal waters of the Greater Antilles and Caribbe↗
USGS2010

Begging behavior in budgerigars

Five hypotheses about relationships between begging rates, feeding rates and other variables were investigated in captive budgerigar nestlings from 23 days post-hatch to fledge date (Period 4). Within families, nestlings that begged more frequently during Period 4 were fed more often by their parents, but there was no indication that nestling weight on day 23 was related to begging rates in the subsequent growth interval. Instead, last-hatched nestlings begged more than their older siblings. Last-hatched nestlings were not “undersized” at the beginning of Period 4 relative to their siblings, and they experienced less competition than their siblings had at comparable ages. Even so, last-hatched budgerigars begged more often, were fed more often and fledged at heavier weights than their older nestmates. Across families, there was a strong positive relationship between average Period 4 begging rate and average parental feeding rate, but this relationship was much weaker when brood sex ratio was taken into account: female-biased broods had much higher begging and feeding rates than male-biased broods. Brood size was related to begging, with higher ratios of begging to feeding rates for family members than for single nestlings. Taken together, these results suggest that relationships between feeding and begging behavior in budgerigars are more complex than theoretical models have suggested. More studies of avian begging and feeding patterns are required before we can generalize about the control of parental food allocations in birds.

Ethology↗
USGS2007

Polymorphic microsatellite DNA markers for the Florida manatee (Trichechus manatus latirostris)

Florida manatees (Trichechus manatus latirostris) are marine mammals that inhabit the coastal waters and rivers of the southeastern USA, primarily Florida. Previous studies have shown that Florida manatees have low mitochondrial DNA variability, suggesting that nuclear DNA loci are necessary for discriminatory analyses. Here we report 10 polymorphic microsatellite loci with an average of 4.2 alleles per locus, and average heterozygosity of 50.1%. These loci have been developed for use in population studies, parentage assignment, and individual identification. ?? 2007 Blackwell Publishing Ltd.

Molecular Ecology Notes↗
USGS2006

Phylogeography, phylogeny and hybridization in trichechid sirenians: Implications for manatee conservation

The three living species of manatees, West Indian ( Trichechus manatus ), Amazonian ( Trichechus inunguis ) and West African ( Trichechus senegalensis ), are distributed across the shallow tropical and subtropical waters of America and the western coast of Africa. We have sequenced the mitochondrial DNA control region in 330 Trichechus to compare their phylogeographic patterns. In T . manatus we observed a marked population structure with the identification of three haplotype clusters showing a distinct spatial distribution. A geographic barrier represented by the continuity of the Lesser Antilles to Trinidad Island, near the mouth of the Orinoco River in Venezuela, appears to have restricted the gene flow historically in T . manatus . However, for T. inunguis we observed a single expanding population cluster, with a high diversity of very closely related haplotypes. A marked geographic population structure is likely present in T . senegalensis with at least two distinct clusters. Phylogenetic analyses with the mtDNA cytochrome b gene suggest a clade of the marine Trichechus species, with T . inunguis as the most basal trichechid. This is in agreement with previous morphological analyses. Mitochondrial DNA, autosomal microsatellites and cytogenetic analyses revealed the presence of hybrids between the T . manatus and T . inunguis species at the mouth of the Amazon River in Brazil, extending to the Guyanas and probably as far as the mouth of the Orinoco River. Future conservation strategies should consider the distinct population structure of manatee species, as well as the historical barriers to gene flow and the likely occurrence of interspecific hybridization.

Molecular Ecology↗
USGS1984

Ferromanganese crust resources in the Pacific and Atlantic Oceans

Ferromanganese crusts on raised areas of the ocean floor have joined abyssal manganese nodules and hydrothermal sulfides as potential marine resources. Significant volumes of cobalt-rich (about 1% Co) crusts have been identified to date within the US Exclusive Economic Zone (EEZ) in the Central Pacific: in the NW Hawaiian Ridge and Seamount region and in the seamounts in the Johnston Island and Palmyra Island regions. Large volumes of lower grade crusts, slabs, and nodules are also present in shallow ( greater than 1000 m) waters on the Blake plateau, off Florida-South Carolina in the Atlantic Ocean. Data on ferromanganese crusts have been increased by recent German and USGS cruises, but are still sparse, and other regions having crust potential are under current investigation. The authors discuss economic potentials for cobalt-rich crusts in the Central Pacific and Western North Atlantic oceans, with special reference to US EEZ areas. Additional research is needed before more quantitative resource estimates can be made.

Conference Paper↗